Variant report

Variant	rs13403823
Chromosome Location	chr2:67939457-67939458
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10191401	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10203890	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10865363	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11675008	0.82[EUR][1000 genomes]
rs11692071	0.82[EUR][1000 genomes]
rs1430774	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4671836	0.81[EUR][1000 genomes]
rs4671841	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56324151	0.86[ASN][1000 genomes]
rs58450143	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs724568	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs737358	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7564895	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534389	chr2:67388428-68225338	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
2	nsv1007345	chr2:67870225-67980094	Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Weak transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv834250	chr2:67897722-68051532	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:67939000-67940000	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr2:67939200-67939600	Enhancers	Colon Smooth Muscle	Colon
3	chr2:67939200-67939800	Active TSS	Brain Hippocampus Middle	brain
4	chr2:67939200-67940400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr2:67939200-67940400	Enhancers	Fetal Lung	lung
6	chr2:67939200-67940600	Enhancers	Fetal Stomach	stomach
7	chr2:67939400-67939600	Enhancers	Brain Inferior Temporal Lobe	brain
8	chr2:67939400-67939800	Active TSS	Brain Substantia Nigra	brain
9	chr2:67939400-67939800	Enhancers	Gastric	stomach
10	chr2:67939400-67939800	Active TSS	NHLF	lung
11	chr2:67939400-67940000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links