Variant report

Variant	rs13404885
Chromosome Location	chr2:231092953-231092954
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:231087067..231089892-chr2:231091301..231094794,3	K562	blood:
2	chr2:231088013..231089892-chr2:231091301..231094041,2	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10174828	1.00[AMR][1000 genomes]
rs10174945	1.00[AMR][1000 genomes]
rs10183659	1.00[AFR][1000 genomes]
rs10185385	1.00[AMR][1000 genomes]
rs10187268	1.00[AFR][1000 genomes]
rs10197151	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10200975	1.00[AMR][1000 genomes]
rs10208536	1.00[AMR][1000 genomes]
rs13382790	1.00[AMR][1000 genomes]
rs13384496	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13392074	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs13395963	1.00[AMR][1000 genomes]
rs28733458	1.00[AFR][1000 genomes]
rs4973302	1.00[YRI][hapmap]
rs6743287	1.00[AMR][1000 genomes]
rs6761254	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9653377	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001562	chr2:230862717-231187043	Flanking Active TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv536156	chr2:230862717-231187043	Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv498047	chr2:230951712-231250489	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv869834	chr2:231045013-231139827	Strong transcription Flanking Active TSS Weak transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv998291	chr2:231045388-231136278	Enhancers Weak transcription Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv584666	chr2:231050715-231106621	Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv18000	chr2:231072978-231467847	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:231085000-231094800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:231086400-231095000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr2:231089800-231093200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
4	chr2:231090200-231093800	Active TSS	Primary B cells from peripheral blood	blood
5	chr2:231090200-231170000	Weak transcription	Spleen	Spleen
6	chr2:231090400-231093200	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
7	chr2:231090400-231093200	Active TSS	Duodenum Mucosa	Duodenum
8	chr2:231091000-231094800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr2:231091000-231102600	Weak transcription	Small Intestine	intestine
10	chr2:231091400-231094000	Enhancers	Primary T cells from cord blood	blood
11	chr2:231091600-231094000	Flanking Active TSS	Primary B cells from cord blood	blood
12	chr2:231091800-231093400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
13	chr2:231092000-231094600	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr2:231092200-231093200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr2:231092200-231093400	Active TSS	Primary T cells fromperipheralblood	blood
16	chr2:231092200-231093600	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
17	chr2:231092200-231093600	Active TSS	GM12878-XiMat	blood
18	chr2:231092200-231094800	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr2:231092400-231093400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
20	chr2:231092400-231094200	Enhancers	Primary T killer memory cells from peripheral blood	blood
21	chr2:231092400-231094800	Weak transcription	Monocytes-CD14+_RO01746	blood
22	chr2:231092600-231093000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr2:231092600-231094000	Enhancers	Primary T helper naive cells from peripheral blood	blood
24	chr2:231092600-231095000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
25	chr2:231092600-231118400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
26	chr2:231092800-231093200	Active TSS	Primary T helper cells PMA-I stimulated	--
27	chr2:231092800-231093600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood

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