Variant report

Variant	rs13408474
Chromosome Location	chr2:231433853-231433854
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs11683686	0.87[ASN][1000 genomes]
rs11683812	0.81[ASN][1000 genomes]
rs11686960	0.86[ASN][1000 genomes]
rs11687011	0.86[ASN][1000 genomes]
rs11687105	0.81[ASN][1000 genomes]
rs11694980	0.87[ASN][1000 genomes]
rs13418392	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17276229	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs17276271	0.80[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17276306	0.89[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1966975	0.86[ASN][1000 genomes]
rs2288356	0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs2396762	0.86[ASN][1000 genomes]
rs2396763	0.85[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2396764	0.83[ASN][1000 genomes]
rs55677537	0.86[ASN][1000 genomes]
rs55711997	0.85[ASN][1000 genomes]
rs55721320	0.86[ASN][1000 genomes]
rs55795378	0.82[ASN][1000 genomes]
rs55913752	0.86[ASN][1000 genomes]
rs56007290	0.86[ASN][1000 genomes]
rs56187540	0.86[ASN][1000 genomes]
rs56246275	0.84[ASN][1000 genomes]
rs56295541	0.88[ASN][1000 genomes]
rs56317111	0.86[ASN][1000 genomes]
rs57193071	0.81[ASN][1000 genomes]
rs57793329	0.88[ASN][1000 genomes]
rs62192832	0.86[ASN][1000 genomes]
rs62192834	0.86[ASN][1000 genomes]
rs62192835	0.86[ASN][1000 genomes]
rs62192836	0.86[ASN][1000 genomes]
rs62192837	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62192838	0.86[ASN][1000 genomes]
rs62192839	0.86[ASN][1000 genomes]
rs62192845	0.83[ASN][1000 genomes]
rs62192846	0.88[ASN][1000 genomes]
rs62195511	0.86[ASN][1000 genomes]
rs62195512	0.86[ASN][1000 genomes]
rs6754406	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs68007066	0.86[ASN][1000 genomes]
rs890678	0.86[ASN][1000 genomes]
rs9711902	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv18000	chr2:231072978-231467847	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv875949	chr2:231407663-231434272	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	lncRNA	n/a	inside rSNPs	diseases
3	nsv875950	chr2:231413681-231434272	Enhancers Weak transcription Active TSS Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases
4	nsv875951	chr2:231414688-231434272	Weak transcription Enhancers Flanking Active TSS Active TSS	lncRNA	n/a	inside rSNPs	diseases
5	nsv875952	chr2:231415189-231434272	Enhancers Weak transcription Flanking Active TSS Active TSS	lncRNA	n/a	inside rSNPs	diseases
6	nsv875953	chr2:231415189-231457819	Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv875954	chr2:231421531-231441828	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv979181	chr2:231432587-231439718	Weak transcription ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:231431000-231434000	Weak transcription	Primary B cells from cord blood	blood

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