Variant report

Variant	rs9711902
Chromosome Location	chr2:231436871-231436872
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1051223	0.82[ASN][1000 genomes]
rs11683686	0.84[ASN][1000 genomes]
rs11686960	0.89[ASN][1000 genomes]
rs11687011	0.89[ASN][1000 genomes]
rs11694980	0.84[ASN][1000 genomes]
rs13408474	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13418392	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17276271	0.89[ASN][1000 genomes]
rs17276306	0.89[ASN][1000 genomes]
rs1966975	0.89[ASN][1000 genomes]
rs1966976	0.82[ASN][1000 genomes]
rs2288356	0.88[ASN][1000 genomes]
rs2396762	0.89[ASN][1000 genomes]
rs2396763	0.87[ASN][1000 genomes]
rs2396764	0.86[ASN][1000 genomes]
rs55677537	0.89[ASN][1000 genomes]
rs55711997	0.88[ASN][1000 genomes]
rs55721320	0.89[ASN][1000 genomes]
rs55795378	0.85[ASN][1000 genomes]
rs55913752	0.89[ASN][1000 genomes]
rs56007290	0.89[ASN][1000 genomes]
rs56187540	0.89[ASN][1000 genomes]
rs56246275	0.87[ASN][1000 genomes]
rs56295541	0.85[ASN][1000 genomes]
rs56317111	0.89[ASN][1000 genomes]
rs57193071	0.84[ASN][1000 genomes]
rs57793329	0.85[ASN][1000 genomes]
rs62192832	0.89[ASN][1000 genomes]
rs62192834	0.89[ASN][1000 genomes]
rs62192835	0.89[ASN][1000 genomes]
rs62192836	0.89[ASN][1000 genomes]
rs62192837	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62192838	0.89[ASN][1000 genomes]
rs62192839	0.89[ASN][1000 genomes]
rs62192845	0.86[ASN][1000 genomes]
rs62192846	0.91[ASN][1000 genomes]
rs62195511	0.83[ASN][1000 genomes]
rs62195512	0.83[ASN][1000 genomes]
rs62195513	0.87[AFR][1000 genomes]
rs6711773	0.87[AFR][1000 genomes]
rs6754406	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs68007066	0.89[ASN][1000 genomes]
rs890678	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv18000	chr2:231072978-231467847	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv875953	chr2:231415189-231457819	Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv875954	chr2:231421531-231441828	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv979181	chr2:231432587-231439718	Weak transcription ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:231436600-231440000	Weak transcription	Primary T cells from cord blood	blood

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