Variant report

Variant	rs13410283
Chromosome Location	chr2:36822687-36822688
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:36817392..36820041-chr2:36820581..36825790,5	MCF-7	breast:
2	chr2:36816372..36820679-chr2:36821932..36827532,8	K562	blood:

Variant related genes	Relation type
ENSG00000256845	Chromatin interaction
ENSG00000171055	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10164588	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10180792	0.80[ASN][1000 genomes]
rs11678218	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13396898	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13405239	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2888372	0.82[EUR][1000 genomes]
rs34220444	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3770785	0.84[EUR][1000 genomes]
rs4670150	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs5003670	0.81[ASN][1000 genomes]
rs56138860	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62132461	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs918067	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010985	chr2:36707157-36942066	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv535642	chr2:36707157-36942066	Genic enhancers Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:36751000-36824200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:36792200-36824200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr2:36802000-36823800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr2:36807600-36823600	Weak transcription	Spleen	Spleen
5	chr2:36808600-36823400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr2:36808600-36823800	Weak transcription	Fetal Kidney	kidney
7	chr2:36808800-36823400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr2:36808800-36823400	Weak transcription	Small Intestine	intestine
9	chr2:36808800-36823600	Weak transcription	Aorta	Aorta
10	chr2:36809000-36823400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr2:36810600-36823000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr2:36811400-36823400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr2:36811400-36823600	Weak transcription	Right Ventricle	heart
14	chr2:36811800-36823600	Weak transcription	Pancreas	Pancrea
15	chr2:36812000-36823400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr2:36812200-36823200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr2:36812200-36823200	Weak transcription	Stomach Smooth Muscle	stomach
18	chr2:36812200-36823400	Weak transcription	Lung	lung
19	chr2:36812200-36824000	Weak transcription	HSMMtube	muscle
20	chr2:36813400-36823600	Weak transcription	Hela-S3	cervix
21	chr2:36814600-36823000	Weak transcription	Left Ventricle	heart
22	chr2:36814600-36823400	Weak transcription	Fetal Stomach	stomach
23	chr2:36815000-36822800	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr2:36815600-36823200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr2:36816800-36823200	Weak transcription	Right Atrium	heart
26	chr2:36816800-36823200	Weak transcription	NHLF	lung
27	chr2:36816800-36823600	Weak transcription	Fetal Heart	heart
28	chr2:36817200-36823200	Weak transcription	Primary T cells from cord blood	blood
29	chr2:36817400-36823000	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr2:36817600-36822800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr2:36817800-36823400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr2:36818000-36823000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr2:36818000-36823000	Weak transcription	Dnd41	blood
34	chr2:36818000-36823200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr2:36818000-36823200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr2:36818000-36823400	Weak transcription	Fetal Muscle Leg	muscle
37	chr2:36818000-36823600	Weak transcription	Fetal Muscle Trunk	muscle
38	chr2:36818000-36823800	Weak transcription	Fetal Thymus	thymus
39	chr2:36818000-36824200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr2:36818200-36822800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr2:36818200-36822800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
42	chr2:36818200-36822800	Weak transcription	Primary neutrophils fromperipheralblood	blood
43	chr2:36818200-36823000	Weak transcription	Osteobl	bone
44	chr2:36818200-36823400	Weak transcription	Primary B cells from peripheral blood	blood
45	chr2:36818200-36823400	Weak transcription	HMEC	breast
46	chr2:36818200-36823800	Weak transcription	Primary hematopoietic stem cells	blood
47	chr2:36818200-36824000	Weak transcription	K562	blood
48	chr2:36818400-36823400	Weak transcription	NH-A	brain
49	chr2:36819000-36823200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr2:36819600-36822800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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