Variant report
| Variant | rs918067 |
|---|---|
| Chromosome Location | chr2:36834707-36834708 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr2:36823117..36826552-chr2:36831110..36836877,7 | MCF-7 | breast: | |
| 2 | chr2:36823490..36825133-chr2:36832447..36835155,2 | K562 | blood: | |
| 3 | chr2:36822925..36827633-chr2:36831305..36836913,8 | MCF-7 | breast: | |
| 4 | chr2:36832279..36835040-chr2:36835404..36839522,4 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000171055 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs10164588 | 0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs11678218 | 0.81[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs11683048 | 0.87[CHB][hapmap] |
| rs12464610 | 0.81[CHB][hapmap];0.87[GIH][hapmap] |
| rs13396898 | 0.86[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs13405239 | 0.80[ASN][1000 genomes] |
| rs13410283 | 0.86[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs1548894 | 0.81[CEU][hapmap];0.91[GIH][hapmap];0.87[TSI][hapmap];0.83[EUR][1000 genomes] |
| rs34220444 | 0.84[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs3770785 | 0.81[GIH][hapmap] |
| rs4670150 | 0.87[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs4670152 | 0.87[CHB][hapmap] |
| rs4670153 | 0.90[GIH][hapmap];0.83[JPT][hapmap];0.84[MEX][hapmap] |
| rs4670575 | 0.87[CHB][hapmap] |
| rs56138860 | 0.83[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs62132461 | 0.83[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs744917 | 0.81[CEU][hapmap];0.91[GIH][hapmap];0.87[TSI][hapmap];0.83[EUR][1000 genomes] |
| rs7577490 | 0.82[EUR][1000 genomes] |
| rs7580827 | 0.81[EUR][1000 genomes] |
| rs918066 | 0.81[EUR][1000 genomes] |
| rs918068 | 0.81[CEU][hapmap];0.83[EUR][1000 genomes] |
| rs9967785 | 0.83[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1010985 | chr2:36707157-36942066 | Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 12 gene(s) | inside rSNPs | diseases |
| 2 | nsv535642 | chr2:36707157-36942066 | Genic enhancers Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 12 gene(s) | inside rSNPs | diseases |
| 3 | nsv2681 | chr2:36822990-36848171 | Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionCpG islandChromatin interactive region | 6 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:5)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs918067 | CRIM1 | cis | cerebellum | SCAN |
| rs918067 | FEZ2 | cis | parietal | SCAN |
| rs918067 | STRN | cis | cerebellum | SCAN |
| rs918067 | MORN2 | cis | cerebellum | SCAN |
| rs918067 | FEZ2 | cis | cerebellum | SCAN |
Chromatin state (count:0 , 50 per page) page:
| No data |
