Variant report

Variant	rs13410475
Chromosome Location	chr2:173309618-173309619
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10187564	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10197251	0.85[YRI][hapmap]
rs10207640	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10207654	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10210544	1.00[JPT][hapmap]
rs10930559	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12052253	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12052385	1.00[CEU][hapmap];0.85[JPT][hapmap];1.00[EUR][1000 genomes]
rs12053442	0.85[EUR][1000 genomes]
rs12613307	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12615584	0.85[EUR][1000 genomes]
rs12615596	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12621278	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12622724	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13414928	1.00[CEU][hapmap];0.84[CHB][hapmap];0.81[JPT][hapmap];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13421350	0.93[JPT][hapmap]
rs1574256	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1574259	1.00[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16860397	1.00[CEU][hapmap];0.85[JPT][hapmap];1.00[EUR][1000 genomes]
rs16860416	1.00[JPT][hapmap]
rs16860419	1.00[EUR][1000 genomes]
rs16860426	1.00[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16860438	1.00[CEU][hapmap];0.86[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16860478	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16860513	1.00[CEU][hapmap]
rs16860515	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16860634	1.00[CEU][hapmap]
rs2293645	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs2293647	1.00[CEU][hapmap]
rs2293648	1.00[CEU][hapmap];0.85[AMR][1000 genomes]
rs28485589	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3762618	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4405725	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55867175	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56882727	0.85[EUR][1000 genomes]
rs56892098	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57244773	0.85[EUR][1000 genomes]
rs57404607	0.85[EUR][1000 genomes]
rs57587465	0.85[EUR][1000 genomes]
rs57878744	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59374567	0.85[EUR][1000 genomes]
rs59454075	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59970483	0.85[EUR][1000 genomes]
rs60096331	0.85[EUR][1000 genomes]
rs6726739	0.93[JPT][hapmap]
rs6730284	0.85[EUR][1000 genomes]
rs6741759	0.85[EUR][1000 genomes]
rs7564416	0.93[JPT][hapmap]
rs7607084	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs9636257	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533927	chr2:173161637-173796894	Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173304200-173311400	Weak transcription	Liver	Liver
2	chr2:173304600-173310400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr2:173305000-173310400	Weak transcription	Brain Cingulate Gyrus	brain
4	chr2:173305000-173316800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr2:173306200-173310400	Weak transcription	Fetal Lung	lung
6	chr2:173306200-173311200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr2:173306800-173309800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
8	chr2:173306800-173311400	Weak transcription	Primary hematopoietic stem cells	blood
9	chr2:173306800-173316400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr2:173307000-173310600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr2:173307200-173318600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr2:173307400-173310400	Weak transcription	Brain Substantia Nigra	brain
13	chr2:173307400-173310400	Weak transcription	Gastric	stomach
14	chr2:173307400-173310400	Weak transcription	Spleen	Spleen
15	chr2:173307400-173310400	Weak transcription	NHLF	lung
16	chr2:173307400-173310600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr2:173307400-173312800	Weak transcription	Fetal Kidney	kidney
18	chr2:173307400-173313600	Weak transcription	Placenta	Placenta
19	chr2:173307400-173322400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr2:173307600-173310200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr2:173307600-173310400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr2:173307600-173310400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr2:173307600-173310400	Weak transcription	Adipose Nuclei	Adipose
24	chr2:173307600-173310400	Weak transcription	Fetal Thymus	thymus
25	chr2:173307600-173310400	Weak transcription	Left Ventricle	heart
26	chr2:173307600-173310400	Weak transcription	Lung	lung
27	chr2:173307600-173310400	Weak transcription	Pancreas	Pancrea
28	chr2:173307600-173310400	Weak transcription	Right Atrium	heart
29	chr2:173307600-173310400	Weak transcription	HUVEC	blood vessel
30	chr2:173307600-173310600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr2:173307600-173310600	Genic enhancers	NHEK	skin
32	chr2:173307600-173312400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
33	chr2:173307600-173312400	Weak transcription	Colonic Mucosa	Colon
34	chr2:173307600-173312600	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr2:173307600-173312600	Weak transcription	HUES48 Cell Line	embryonic stem cell
36	chr2:173307600-173312600	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr2:173307600-173313400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
38	chr2:173307600-173313600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr2:173307600-173313800	Weak transcription	Right Ventricle	heart
40	chr2:173307600-173314000	Enhancers	Duodenum Mucosa	Duodenum
41	chr2:173307600-173314600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr2:173307600-173314800	Weak transcription	Esophagus	oesophagus
43	chr2:173307600-173315600	Enhancers	Primary T helper cells PMA-I stimulated	--
44	chr2:173307600-173321000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr2:173307800-173310600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr2:173307800-173310600	Weak transcription	NH-A	brain
47	chr2:173307800-173310800	Weak transcription	Muscle Satellite Cultured Cells	--
48	chr2:173307800-173312400	Weak transcription	HUES6 Cell Line	embryonic stem cell
49	chr2:173308000-173310400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr2:173308000-173312000	Weak transcription	Rectal Mucosa Donor 29	rectum

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