Variant report

Variant	rs57244773
Chromosome Location	chr2:173393605-173393606
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1001926	1.00[AFR][1000 genomes]
rs10187564	0.85[EUR][1000 genomes]
rs10207640	0.85[EUR][1000 genomes]
rs10207654	0.85[EUR][1000 genomes]
rs10930559	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12052253	0.85[EUR][1000 genomes]
rs12052385	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs12053442	1.00[AFR][1000 genomes]
rs12613307	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12615584	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12615596	0.82[EUR][1000 genomes]
rs12621278	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs12622724	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13410475	0.85[EUR][1000 genomes]
rs13414928	0.82[EUR][1000 genomes]
rs1574256	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs1574259	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs16860397	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs16860419	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs16860426	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs16860438	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs16860478	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16860513	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16860515	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16860634	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16860643	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2008518	1.00[AFR][1000 genomes]
rs2178476	1.00[AFR][1000 genomes]
rs2272496	1.00[AFR][1000 genomes]
rs2293645	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2293647	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs2293648	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3762618	0.85[EUR][1000 genomes]
rs4405725	0.82[EUR][1000 genomes]
rs55867175	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56882727	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57404607	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57587465	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59300838	0.81[ASN][1000 genomes]
rs59374567	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59454075	0.85[EUR][1000 genomes]
rs59476799	0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59970483	1.00[EUR][1000 genomes]
rs60096331	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6730284	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6741759	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6743174	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7591769	0.82[ASN][1000 genomes]
rs9636257	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533927	chr2:173161637-173796894	Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173376400-173397400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:173387400-173395000	Weak transcription	Primary T cells from cord blood	blood
3	chr2:173392000-173395000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr2:173392000-173398200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr2:173392000-173400000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr2:173392600-173419600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr2:173393600-173398600	Weak transcription	Primary T helper cells fromperipheralblood	blood

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