Variant report

Variant	rs1341051
Chromosome Location	chr10:112614210-112614211
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:112612328..112615188-chr10:112618146..112620341,2	MCF-7	breast:
2	chr10:112606555..112610300-chr10:112611947..112614972,3	MCF-7	breast:
3	chr10:112608440..112622028-chr10:112627331..112635995,26	MCF-7	breast:
4	chr10:112602080..112604237-chr10:112611419..112615912,4	K562	blood:
5	chr10:112612441..112615038-chr10:112661869..112664836,2	K562	blood:
6	chr10:112604056..112607553-chr10:112607737..112614942,9	MCF-7	breast:

Variant related genes	Relation type
ENSG00000232470	Chromatin interaction
ENSG00000150593	Chromatin interaction
ENSG00000214413	Chromatin interaction
ENSG00000203497	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10787287	0.88[TSI][hapmap];0.80[EUR][1000 genomes]
rs10787289	0.83[CEU][hapmap];0.82[GIH][hapmap];0.81[MEX][hapmap];0.92[TSI][hapmap];0.86[EUR][1000 genomes]
rs10787292	0.91[TSI][hapmap]
rs1322995	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1341053	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1359849	0.81[TSI][hapmap]
rs1410057	0.91[TSI][hapmap]
rs4918607	1.00[CEU][hapmap];0.81[CHB][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7067540	0.83[ASW][hapmap];1.00[CEU][hapmap];0.81[CHB][hapmap];0.88[CHD][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7086350	0.85[TSI][hapmap]
rs7095404	0.91[TSI][hapmap]
rs7895872	0.83[CEU][hapmap];0.81[CHD][hapmap];0.82[GIH][hapmap];0.94[TSI][hapmap];0.85[EUR][1000 genomes]
rs7899762	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045608	chr10:112524813-112677557	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1041758	chr10:112552897-112677557	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv896003	chr10:112579299-112631211	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv896002	chr10:112579299-112638028	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv1051566	chr10:112580049-112730573	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1341051	XPNPEP1	cis	cerebellum	SCAN

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:112597000-112617200	Weak transcription	Psoas Muscle	Psoas
2	chr10:112597400-112614600	Weak transcription	Aorta	Aorta
3	chr10:112597800-112617200	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr10:112600600-112617200	Weak transcription	Right Ventricle	heart
5	chr10:112602400-112620600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr10:112605600-112617000	Weak transcription	Fetal Heart	heart
7	chr10:112607600-112617000	Weak transcription	Fetal Muscle Trunk	muscle
8	chr10:112608200-112616000	Enhancers	Primary T cells fromperipheralblood	blood
9	chr10:112608800-112616000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr10:112608800-112616000	Enhancers	Primary T helper naive cells from peripheral blood	blood
11	chr10:112609000-112615000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr10:112609000-112616000	Enhancers	Primary T killer memory cells from peripheral blood	blood
13	chr10:112609200-112615400	Enhancers	Primary neutrophils fromperipheralblood	blood
14	chr10:112609200-112616000	Enhancers	Primary T helper cells fromperipheralblood	blood
15	chr10:112609200-112616000	Enhancers	Placenta	Placenta
16	chr10:112609800-112615800	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr10:112610000-112614400	Enhancers	Primary B cells from cord blood	blood
18	chr10:112610600-112616000	Enhancers	Fetal Intestine Small	intestine
19	chr10:112611000-112614400	Enhancers	Fetal Intestine Large	intestine
20	chr10:112611000-112615800	Enhancers	Primary T cells from cord blood	blood
21	chr10:112611200-112616000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
22	chr10:112611200-112616000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr10:112611200-112617200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr10:112611200-112619600	Weak transcription	Osteobl	bone
25	chr10:112611200-112630600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr10:112611400-112617000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr10:112611400-112617000	Weak transcription	Adipose Nuclei	Adipose
28	chr10:112612400-112617000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr10:112612400-112617000	Weak transcription	Left Ventricle	heart
30	chr10:112612400-112617000	Weak transcription	Spleen	Spleen
31	chr10:112612400-112617400	Weak transcription	HSMMtube	muscle
32	chr10:112612400-112618000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr10:112612600-112617000	Weak transcription	Gastric	stomach
34	chr10:112612600-112619000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr10:112612600-112619200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr10:112612800-112617000	Weak transcription	Fetal Muscle Leg	muscle
37	chr10:112612800-112617000	Weak transcription	Small Intestine	intestine
38	chr10:112612800-112617000	Weak transcription	NHDF-Ad	bronchial
39	chr10:112613000-112614600	Weak transcription	Pancreas	Pancrea
40	chr10:112613000-112615400	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr10:112613000-112616000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
42	chr10:112613000-112616000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
43	chr10:112613000-112616000	Enhancers	Duodenum Mucosa	Duodenum
44	chr10:112613000-112617000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr10:112613000-112617000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr10:112613000-112617000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr10:112613000-112617000	Weak transcription	Colonic Mucosa	Colon
48	chr10:112613000-112617000	Weak transcription	Esophagus	oesophagus
49	chr10:112613000-112617000	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr10:112613000-112617200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links