Variant report

Variant	rs4918607
Chromosome Location	chr10:112620904-112620905
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:112608440..112622028-chr10:112627331..112635995,26	MCF-7	breast:
2	chr10:112619976..112621835-chr10:112622055..112625024,2	MCF-7	breast:
3	chr10:112619161..112621950-chr10:112630112..112633411,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000232470	Chromatin interaction
ENSG00000203497	Chromatin interaction
ENSG00000150593	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10787287	0.84[EUR][1000 genomes]
rs10787289	0.83[CEU][hapmap];0.86[CHB][hapmap];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1322995	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1327548	0.82[EUR][1000 genomes]
rs1341051	1.00[CEU][hapmap];0.81[CHB][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1341053	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7067540	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7895872	0.83[CEU][hapmap];0.81[CHB][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7899762	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045608	chr10:112524813-112677557	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1041758	chr10:112552897-112677557	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv896003	chr10:112579299-112631211	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv896002	chr10:112579299-112638028	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv1051566	chr10:112580049-112730573	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:112611200-112630600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:112614800-112624400	Weak transcription	Aorta	Aorta
3	chr10:112617000-112621000	Enhancers	Brain Cingulate Gyrus	brain
4	chr10:112617000-112621000	Enhancers	Right Atrium	heart
5	chr10:112617000-112621200	Enhancers	Adipose Nuclei	Adipose
6	chr10:112617000-112621200	Enhancers	Liver	Liver
7	chr10:112617000-112621200	Enhancers	Esophagus	oesophagus
8	chr10:112617000-112621200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr10:112617000-112621200	Enhancers	Sigmoid Colon	Sigmoid Colon
10	chr10:112617000-112621200	Enhancers	Stomach Mucosa	stomach
11	chr10:112617000-112621200	Enhancers	Spleen	Spleen
12	chr10:112617000-112621400	Enhancers	Fetal Intestine Small	intestine
13	chr10:112617000-112621400	Enhancers	Fetal Muscle Leg	muscle
14	chr10:112617000-112622000	Enhancers	Primary B cells from cord blood	blood
15	chr10:112617000-112622400	Enhancers	Primary T cells from cord blood	blood
16	chr10:112617000-112622800	Enhancers	Fetal Intestine Large	intestine
17	chr10:112617000-112623000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
18	chr10:112617000-112623200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
19	chr10:112617000-112624200	Enhancers	Primary hematopoietic stem cells	blood
20	chr10:112617000-112624600	Enhancers	Primary monocytes fromperipheralblood	blood
21	chr10:112617000-112624600	Enhancers	Primary B cells from peripheral blood	blood
22	chr10:112617000-112624600	Enhancers	Primary T cells fromperipheralblood	blood
23	chr10:112617000-112624600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
24	chr10:112617000-112628600	Enhancers	Placenta	Placenta
25	chr10:112617200-112621000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr10:112617200-112621200	Enhancers	Brain Substantia Nigra	brain
27	chr10:112617200-112621400	Enhancers	Primary hematopoietic stem cells short term culture	blood
28	chr10:112617200-112624400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr10:112617400-112621000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr10:112617400-112624200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr10:112617400-112624200	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr10:112617800-112621000	Enhancers	Brain Inferior Temporal Lobe	brain
33	chr10:112617800-112630600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr10:112618000-112621000	Enhancers	Fetal Heart	heart
35	chr10:112618000-112621400	Enhancers	Pancreas	Pancrea
36	chr10:112618000-112623000	Enhancers	Rectal Mucosa Donor 31	rectum
37	chr10:112618000-112624600	Weak transcription	Left Ventricle	heart
38	chr10:112618200-112621200	Enhancers	Colonic Mucosa	Colon
39	chr10:112618400-112621400	Enhancers	K562	blood
40	chr10:112618400-112630800	Enhancers	Fetal Thymus	thymus
41	chr10:112618600-112623800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr10:112618600-112624000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr10:112618600-112624400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr10:112618600-112624600	Enhancers	Duodenum Mucosa	Duodenum
45	chr10:112618800-112621000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr10:112618800-112621000	Enhancers	Skeletal Muscle Female	skeletal muscle
47	chr10:112618800-112621200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr10:112618800-112621400	Enhancers	Small Intestine	intestine
49	chr10:112619000-112621000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr10:112619000-112621200	Enhancers	Gastric	stomach

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