Variant report

Variant	rs1341063
Chromosome Location	chr9:18475203-18475204
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1006022	0.82[CHB][hapmap]
rs10733354	0.87[ASN][1000 genomes]
rs10738511	0.87[ASN][1000 genomes]
rs10756963	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10756965	0.90[ASN][1000 genomes]
rs10756966	0.90[ASN][1000 genomes]
rs10756967	0.90[ASN][1000 genomes]
rs10810970	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1329720	0.86[ASW][hapmap];1.00[CEU][hapmap];0.82[CHB][hapmap];0.81[GIH][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1340043	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1417037	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs16936745	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs16936779	1.00[CEU][hapmap];0.82[CHB][hapmap];0.85[YRI][hapmap];0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1888067	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1888068	0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1888069	0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1999174	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2000047	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34619899	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3898100	0.90[ASN][1000 genomes]
rs4246142	0.92[ASN][1000 genomes]
rs4246143	0.92[ASN][1000 genomes]
rs4590536	0.92[ASN][1000 genomes]
rs4961649	0.93[ASN][1000 genomes]
rs4961653	0.86[CHB][hapmap];0.85[YRI][hapmap]
rs4961654	0.81[CHB][hapmap]
rs6475220	0.86[CHB][hapmap]
rs7864622	0.95[CEU][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7864727	0.91[CEU][hapmap];0.82[JPT][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7867766	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491807	chr9:18243672-19009770	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv525659	chr9:18288212-19009041	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1019127	chr9:18288271-18996288	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv892688	chr9:18385143-18551247	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1029449	chr9:18414752-18829127	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
6	nsv540077	chr9:18414752-18829127	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
7	nsv1030931	chr9:18414752-18903530	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:18471800-18475800	Enhancers	Hela-S3	cervix
2	chr9:18473000-18476800	Flanking Active TSS	HUVEC	blood vessel
3	chr9:18473000-18478000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr9:18473200-18476400	Active TSS	NHLF	lung
5	chr9:18473200-18476800	Active TSS	NHDF-Ad	bronchial
6	chr9:18473200-18477800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr9:18473200-18477800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr9:18473400-18475400	Active TSS	Fetal Kidney	kidney
9	chr9:18473400-18475400	Active TSS	Stomach Smooth Muscle	stomach
10	chr9:18473400-18475800	Active TSS	Fetal Muscle Leg	muscle
11	chr9:18473400-18476000	Active TSS	Fetal Stomach	stomach
12	chr9:18473400-18476600	Active TSS	HSMMtube	muscle
13	chr9:18473600-18476200	Active TSS	NH-A	brain
14	chr9:18473800-18475400	Active TSS	iPS-20b Cell Line	embryonic stem cell
15	chr9:18473800-18476200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr9:18473800-18477000	Active TSS	HSMM	muscle
17	chr9:18474000-18475400	Active TSS	Aorta	Aorta
18	chr9:18474000-18475400	Active TSS	Rectal Smooth Muscle	rectum
19	chr9:18474000-18476200	Active TSS	Muscle Satellite Cultured Cells	--
20	chr9:18474200-18478800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr9:18474400-18475400	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr9:18474400-18475400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr9:18474400-18477000	Weak transcription	Brain Substantia Nigra	brain
24	chr9:18474600-18475400	Enhancers	Cortex derived primary cultured neurospheres	brain
25	chr9:18474600-18475400	Active TSS	Adipose Nuclei	Adipose
26	chr9:18474600-18477000	Weak transcription	Brain Hippocampus Middle	brain
27	chr9:18474800-18475400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr9:18474800-18475400	Enhancers	Brain Germinal Matrix	brain
29	chr9:18474800-18477000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr9:18474800-18477200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr9:18474800-18478600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr9:18474800-18478800	Weak transcription	Brain Cingulate Gyrus	brain
33	chr9:18474800-18480200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr9:18475000-18475400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr9:18475000-18475400	Enhancers	HMEC	breast
36	chr9:18475000-18477000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr9:18475000-18477200	Weak transcription	HUES48 Cell Line	embryonic stem cell
38	chr9:18475000-18477200	Weak transcription	Brain Angular Gyrus	brain
39	chr9:18475000-18478600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr9:18475200-18475400	Flanking Active TSS	Fetal Heart	heart
41	chr9:18475200-18475400	Flanking Active TSS	Osteobl	bone
42	chr9:18475200-18477000	Weak transcription	HUES64 Cell Line	embryonic stem cell
43	chr9:18475200-18477200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr9:18475200-18477400	Weak transcription	HUES6 Cell Line	embryonic stem cell
45	chr9:18475200-18477400	Weak transcription	Fetal Brain Female	brain
46	chr9:18475200-18478800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr9:18475200-18484800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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