Variant report

Variant	rs34619899
Chromosome Location	chr9:18491588-18491589
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10217409	0.83[ASN][1000 genomes]
rs10217753	0.80[ASN][1000 genomes]
rs1329720	0.84[AFR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1341063	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1538999	0.85[ASN][1000 genomes]
rs16936779	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1999174	0.82[EUR][1000 genomes]
rs2000047	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4961653	0.87[ASN][1000 genomes]
rs4961654	0.85[ASN][1000 genomes]
rs7036515	0.93[ASN][1000 genomes]
rs7864622	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7864727	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491807	chr9:18243672-19009770	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv525659	chr9:18288212-19009041	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1019127	chr9:18288271-18996288	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv892688	chr9:18385143-18551247	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1029449	chr9:18414752-18829127	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
6	nsv540077	chr9:18414752-18829127	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
7	nsv1030931	chr9:18414752-18903530	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
8	nsv892689	chr9:18485434-18537444	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv892690	chr9:18485434-18592374	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:18482600-18492200	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr9:18487400-18495600	Enhancers	Fetal Heart	heart
3	chr9:18489200-18491800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr9:18490000-18491600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr9:18490000-18493200	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr9:18490200-18493400	Weak transcription	Ovary	ovary
7	chr9:18490400-18492000	Enhancers	Rectal Smooth Muscle	rectum
8	chr9:18490400-18493000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr9:18490400-18509400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr9:18490800-18491600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
11	chr9:18490800-18492000	Enhancers	Fetal Lung	lung
12	chr9:18491000-18491600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr9:18491000-18491800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr9:18491000-18493400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr9:18491000-18493400	Weak transcription	Fetal Kidney	kidney
16	chr9:18491200-18491600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr9:18491200-18491600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr9:18491200-18491600	Enhancers	Colon Smooth Muscle	Colon
19	chr9:18491200-18491800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr9:18491200-18492200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr9:18491200-18492400	Genic enhancers	HSMM	muscle
22	chr9:18491200-18492600	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr9:18491200-18492600	Weak transcription	Stomach Smooth Muscle	stomach
24	chr9:18491200-18492800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr9:18491200-18492800	Weak transcription	Fetal Brain Male	brain
26	chr9:18491200-18493200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr9:18491200-18493200	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr9:18491200-18493400	Weak transcription	Fetal Brain Female	brain
29	chr9:18491200-18494200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr9:18491200-18494800	Weak transcription	Hela-S3	cervix
31	chr9:18491200-18495000	Enhancers	HSMMtube	muscle
32	chr9:18491200-18495200	Enhancers	NHDF-Ad	bronchial
33	chr9:18491200-18495400	Enhancers	NHEK	skin
34	chr9:18491200-18498400	Weak transcription	Fetal Muscle Leg	muscle
35	chr9:18491400-18491600	Flanking Active TSS	Osteobl	bone
36	chr9:18491400-18493600	Weak transcription	Fetal Stomach	stomach
37	chr9:18491400-18493800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr9:18491400-18493800	Weak transcription	Aorta	Aorta
39	chr9:18491400-18494600	Enhancers	HUVEC	blood vessel
40	chr9:18491400-18495600	Enhancers	HMEC	breast
41	chr9:18491400-18495600	Enhancers	NHLF	lung
42	chr9:18491400-18497000	Enhancers	NH-A	brain

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