Variant report

Variant	rs13410922
Chromosome Location	chr2:190479826-190479827
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1225099	1.00[MEX][hapmap]
rs1225107	1.00[MEX][hapmap]
rs1225109	1.00[MEX][hapmap]
rs1233300	1.00[MEX][hapmap]
rs1233303	1.00[MEX][hapmap]
rs13384930	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13396993	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13403567	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13403679	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16831866	1.00[MEX][hapmap]
rs16831876	1.00[MEX][hapmap]
rs16831884	1.00[MEX][hapmap]
rs1899027	1.00[MEX][hapmap]
rs2254167	1.00[MEX][hapmap]
rs2255705	1.00[MEX][hapmap]
rs6434369	1.00[MEX][hapmap]
rs6725344	1.00[MEX][hapmap]
rs7606224	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533029	chr2:189812229-190554339	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13410922	C21orf33	trans	lymphoblastoid	seeQTL

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:190476800-190480600	Enhancers	Placenta	Placenta
2	chr2:190477800-190480000	Enhancers	Fetal Stomach	stomach
3	chr2:190478200-190480000	Enhancers	Fetal Lung	lung
4	chr2:190478600-190480000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr2:190478600-190480000	Enhancers	Hela-S3	cervix
6	chr2:190478600-190480000	Enhancers	K562	blood
7	chr2:190478600-190483800	Weak transcription	HepG2	liver
8	chr2:190479000-190484000	Weak transcription	A549	lung
9	chr2:190479000-190503800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr2:190479200-190484200	Weak transcription	HUVEC	blood vessel
11	chr2:190479400-190480200	Enhancers	Ovary	ovary
12	chr2:190479600-190482200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr2:190479600-190485200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr2:190479800-190483400	Weak transcription	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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