The 2.0 version of rSNPBase

Variant report

Variant rs1225099
Chromosome Location chr2:190602513-190602514
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:64 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:190540800-190611800 Weak transcription Sigmoid Colon Sigmoid Colon
2 chr2:190540800-190618400 Weak transcription Brain Cingulate Gyrus brain
3 chr2:190541600-190617000 Weak transcription Colon Smooth Muscle Colon
4 chr2:190550800-190617000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
5 chr2:190550800-190626800 Weak transcription Right Ventricle heart
6 chr2:190551200-190603400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
7 chr2:190551200-190617000 Weak transcription HSMM muscle
8 chr2:190557400-190617000 Weak transcription Brain Angular Gyrus brain
9 chr2:190563400-190607800 Weak transcription Primary T cells from cord blood blood
10 chr2:190563600-190608400 Weak transcription Brain Anterior Caudate brain
11 chr2:190563600-190611800 Weak transcription Brain Substantia Nigra brain
12 chr2:190563600-190612600 Weak transcription Brain Inferior Temporal Lobe brain
13 chr2:190568200-190611600 Weak transcription Skeletal Muscle Male skeletal muscle
14 chr2:190571600-190606800 Weak transcription Primary B cells from cord blood blood
15 chr2:190571600-190607800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
16 chr2:190571600-190608400 Weak transcription Duodenum Smooth Muscle Duodenum
17 chr2:190571600-190612400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
18 chr2:190571800-190608600 Weak transcription Duodenum Mucosa Duodenum
19 chr2:190572000-190608400 Weak transcription Primary T helper cells fromperipheralblood blood
20 chr2:190573000-190606600 Weak transcription Rectal Mucosa Donor 29 rectum
21 chr2:190573000-190611000 Weak transcription Stomach Smooth Muscle stomach
22 chr2:190575000-190615800 Weak transcription Fetal Kidney kidney
23 chr2:190576800-190608200 Weak transcription Primary hematopoietic stem cells blood
24 chr2:190576800-190609000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
25 chr2:190576800-190627000 Weak transcription Pancreas Pancrea
26 chr2:190577000-190604400 Weak transcription Breast Myoepithelial Primary Cells Breast
27 chr2:190577000-190611600 Weak transcription Ovary ovary
28 chr2:190577000-190622600 Weak transcription Aorta Aorta
29 chr2:190577200-190611800 Weak transcription Fetal Stomach stomach
30 chr2:190580000-190611000 Weak transcription Fetal Intestine Large intestine
31 chr2:190580000-190611600 Weak transcription Fetal Adrenal Gland Adrenal Gland
32 chr2:190583000-190626800 Weak transcription Psoas Muscle Psoas
33 chr2:190585200-190608200 Weak transcription Primary monocytes fromperipheralblood blood
34 chr2:190585400-190606600 Weak transcription Fetal Muscle Trunk muscle
35 chr2:190588600-190606800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
36 chr2:190588600-190608400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
37 chr2:190589400-190626600 Weak transcription HUVEC blood vessel
38 chr2:190589600-190611600 Weak transcription Fetal Intestine Small intestine
39 chr2:190590400-190610000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
40 chr2:190590800-190614800 Weak transcription Esophagus oesophagus
41 chr2:190591000-190612800 Weak transcription Rectal Smooth Muscle rectum
42 chr2:190591200-190611200 Weak transcription Fetal Thymus thymus
43 chr2:190591800-190611800 Weak transcription Fetal Muscle Leg muscle
44 chr2:190592200-190608000 Weak transcription Brain Hippocampus Middle brain
45 chr2:190593600-190606800 Weak transcription Rectal Mucosa Donor 31 rectum
46 chr2:190593600-190608400 Weak transcription Fetal Lung lung
47 chr2:190593600-190608400 Weak transcription Skeletal Muscle Female skeletal muscle
48 chr2:190593600-190609200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
49 chr2:190593600-190611800 Weak transcription Left Ventricle heart
50 chr2:190593800-190609000 Weak transcription Adipose Nuclei Adipose

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Last update: Aug 31, 2015