Variant report

Variant	rs1341095
Chromosome Location	chr6:4929921-4929922
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:4775727..4780301-chr6:4925378..4930668,5	K562	blood:
2	chr6:4929125..4930860-chr6:4939699..4942509,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000153046	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs4354198	0.83[LWK][hapmap]
rs4960051	0.93[YRI][hapmap];0.85[AFR][1000 genomes]
rs6597098	0.89[YRI][hapmap]
rs6937699	0.92[YRI][hapmap];0.89[AFR][1000 genomes]
rs9504241	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023527	chr6:4729592-5387176	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	esv2422499	chr6:4745428-5073222	Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv830577	chr6:4834567-5050544	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv462622	chr6:4904380-5172009	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv600871	chr6:4904380-5172009	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:4905800-4931200	Weak transcription	HepG2	liver
2	chr6:4908000-4935600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr6:4908200-4934800	Weak transcription	Primary B cells from cord blood	blood
4	chr6:4911000-4930400	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr6:4911000-4935200	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr6:4912800-4931200	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr6:4913200-4936000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr6:4913200-4941000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr6:4913600-4938000	Weak transcription	Primary B cells from peripheral blood	blood
10	chr6:4914000-4930600	Weak transcription	A549	lung
11	chr6:4914800-4930400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:4914800-4930400	Weak transcription	Duodenum Mucosa	Duodenum
13	chr6:4915200-4931600	Weak transcription	Esophagus	oesophagus
14	chr6:4915400-4930200	Weak transcription	Fetal Muscle Leg	muscle
15	chr6:4915400-4930600	Weak transcription	Gastric	stomach
16	chr6:4915400-4931000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr6:4915400-4931800	Weak transcription	Pancreas	Pancrea
18	chr6:4915600-4931200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr6:4915600-4931200	Weak transcription	NHEK	skin
20	chr6:4915800-4930000	Weak transcription	Colon Smooth Muscle	Colon
21	chr6:4915800-4930400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr6:4915800-4930600	Weak transcription	Placenta	Placenta
23	chr6:4915800-4931600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr6:4915800-4942400	Weak transcription	Aorta	Aorta
25	chr6:4916200-4933200	Weak transcription	Fetal Stomach	stomach
26	chr6:4916600-4935400	Weak transcription	Monocytes-CD14+_RO01746	blood
27	chr6:4917000-4930400	Weak transcription	Small Intestine	intestine
28	chr6:4917000-4931400	Weak transcription	Fetal Intestine Small	intestine
29	chr6:4917200-4930400	Weak transcription	Right Ventricle	heart
30	chr6:4917200-4935000	Weak transcription	Primary T cells fromperipheralblood	blood
31	chr6:4917800-4930400	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr6:4918000-4936000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr6:4918200-4930200	Weak transcription	Primary T helper cells fromperipheralblood	blood
34	chr6:4921200-4931600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr6:4922600-4930600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr6:4922600-4930600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr6:4922600-4931600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr6:4922800-4930200	Weak transcription	Psoas Muscle	Psoas
39	chr6:4923000-4930400	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr6:4923000-4931800	Weak transcription	Spleen	Spleen
41	chr6:4923000-4937800	Weak transcription	Primary T cells from cord blood	blood
42	chr6:4924600-4931600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
43	chr6:4925000-4930000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr6:4925400-4930400	Weak transcription	H9 Cell Line	embryonic stem cell
45	chr6:4925400-4930600	Weak transcription	Placenta Amnion	Placenta Amnion
46	chr6:4925400-4934800	Weak transcription	GM12878-XiMat	blood
47	chr6:4925600-4930600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr6:4925600-4930800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
49	chr6:4925600-4941600	Weak transcription	Primary hematopoietic stem cells	blood
50	chr6:4926000-4930600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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