Variant report

Variant	rs6937699
Chromosome Location	chr6:4931752-4931753
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:4927539..4929296-chr6:4930771..4933089,2	K562	blood:
2	chr6:4927539..4929623-chr6:4930066..4933089,3	K562	blood:

Variant related genes	Relation type
ENSG00000153046	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1341095	0.92[YRI][hapmap];0.89[AFR][1000 genomes]
rs1539004	0.85[AMR][1000 genomes]
rs4354198	0.88[AFR][1000 genomes]
rs4960051	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023527	chr6:4729592-5387176	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	esv2422499	chr6:4745428-5073222	Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv830577	chr6:4834567-5050544	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv462622	chr6:4904380-5172009	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv600871	chr6:4904380-5172009	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:4908000-4935600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr6:4908200-4934800	Weak transcription	Primary B cells from cord blood	blood
3	chr6:4911000-4935200	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr6:4913200-4936000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr6:4913200-4941000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr6:4913600-4938000	Weak transcription	Primary B cells from peripheral blood	blood
7	chr6:4915400-4931800	Weak transcription	Pancreas	Pancrea
8	chr6:4915800-4942400	Weak transcription	Aorta	Aorta
9	chr6:4916200-4933200	Weak transcription	Fetal Stomach	stomach
10	chr6:4916600-4935400	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr6:4917200-4935000	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr6:4918000-4936000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr6:4923000-4931800	Weak transcription	Spleen	Spleen
14	chr6:4923000-4937800	Weak transcription	Primary T cells from cord blood	blood
15	chr6:4925400-4934800	Weak transcription	GM12878-XiMat	blood
16	chr6:4925600-4941600	Weak transcription	Primary hematopoietic stem cells	blood
17	chr6:4927600-4940200	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr6:4928200-4931800	Enhancers	HSMM	muscle
19	chr6:4928200-4933600	Enhancers	HSMMtube	muscle
20	chr6:4928400-4932000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr6:4928600-4932800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
22	chr6:4928800-4933200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr6:4928800-4935600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr6:4929200-4932400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr6:4929400-4931800	Enhancers	K562	blood
26	chr6:4929400-4932600	Enhancers	Fetal Heart	heart
27	chr6:4929400-4941600	Weak transcription	Osteobl	bone
28	chr6:4929600-4931800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr6:4929600-4931800	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr6:4929600-4931800	Weak transcription	NHLF	lung
31	chr6:4929600-4932800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr6:4929800-4932000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr6:4930000-4932200	Enhancers	HUES64 Cell Line	embryonic stem cell
34	chr6:4930000-4932400	Enhancers	Brain Anterior Caudate	brain
35	chr6:4930000-4932600	Enhancers	HUES48 Cell Line	embryonic stem cell
36	chr6:4930000-4932600	Enhancers	iPS-18 Cell Line	embryonic stem cell
37	chr6:4930000-4933400	Enhancers	Colon Smooth Muscle	Colon
38	chr6:4930200-4932600	Enhancers	Stomach Mucosa	stomach
39	chr6:4930200-4932800	Enhancers	Psoas Muscle	Psoas
40	chr6:4930200-4933000	Enhancers	iPS-20b Cell Line	embryonic stem cell
41	chr6:4930200-4934000	Enhancers	Fetal Thymus	thymus
42	chr6:4930200-4934600	Enhancers	Fetal Muscle Leg	muscle
43	chr6:4930200-4939800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
44	chr6:4930400-4932400	Enhancers	Duodenum Mucosa	Duodenum
45	chr6:4930400-4932400	Enhancers	Sigmoid Colon	Sigmoid Colon
46	chr6:4930400-4932400	Enhancers	Stomach Smooth Muscle	stomach
47	chr6:4930400-4932600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
48	chr6:4930400-4932600	Enhancers	Ovary	ovary
49	chr6:4930400-4932800	Enhancers	Right Atrium	heart
50	chr6:4930400-4933000	Enhancers	H9 Cell Line	embryonic stem cell

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