Variant report

Variant	rs13412185
Chromosome Location	chr2:30341814-30341815
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10190925	0.87[YRI][hapmap];0.93[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs13401621	1.00[MEX][hapmap]
rs13414174	0.81[ASW][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.83[YRI][hapmap];0.87[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs13419838	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs6547995	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs72861874	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7583803	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533886	chr2:30130019-31068764	ZNF genes & repeats Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv1002657	chr2:30339312-30516535	Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:30341600-30342600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr2:30341600-30342800	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr2:30341800-30342800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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