Variant report

Variant	rs10190925
Chromosome Location	chr2:30361538-30361539
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10171126	0.90[AMR][1000 genomes]
rs13387960	0.90[AMR][1000 genomes]
rs13388821	0.81[AMR][1000 genomes]
rs13401621	0.90[AMR][1000 genomes]
rs13402417	0.81[AMR][1000 genomes]
rs13403955	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs13412185	0.87[YRI][hapmap];0.93[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs13414174	0.96[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13415390	0.81[AMR][1000 genomes]
rs13415732	0.90[AMR][1000 genomes]
rs13417286	0.90[AMR][1000 genomes]
rs13419838	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13424818	0.81[AMR][1000 genomes]
rs60363102	0.90[AMR][1000 genomes]
rs6547995	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72861874	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7561610	0.90[AMR][1000 genomes]
rs7583803	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533886	chr2:30130019-31068764	ZNF genes & repeats Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv1002657	chr2:30339312-30516535	Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	esv1794716	chr2:30356661-30370785	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:30358000-30368600	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr2:30358800-30361800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr2:30360400-30361600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr2:30360400-30362200	Enhancers	NHEK	skin
5	chr2:30360600-30361600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr2:30360600-30361600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr2:30360600-30361600	Weak transcription	HMEC	breast
8	chr2:30361200-30363200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr2:30361400-30362800	Enhancers	Primary T helper naive cells fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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