Variant report

Variant	rs13417286
Chromosome Location	chr2:30338884-30338885
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:30337708..30339938-chr2:30369818..30372688,2	K562	blood:
2	chr2:30337916..30339804-chr2:30387115..30389293,2	MCF-7	breast:
3	chr2:30313353..30314464-chr2:30338280..30339527,8	K562	blood:
4	chr2:30313436..30314334-chr2:30338241..30339544,4	MCF-7	breast:
5	chr2:30312844..30314414-chr2:30338159..30339562,13	MCF-7	breast:
6	chr2:30337518..30339089-chr2:30368226..30369771,2	K562	blood:
7	chr2:30248896..30249567-chr2:30338389..30339014,2	MCF-7	breast:
8	chr2:30330132..30332963-chr2:30337824..30339590,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10171126	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10190925	0.90[AMR][1000 genomes]
rs13387960	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13388821	0.91[AMR][1000 genomes]
rs13401621	1.00[AMR][1000 genomes]
rs13402417	0.91[AMR][1000 genomes]
rs13403955	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13414174	0.90[AMR][1000 genomes]
rs13415390	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs13415732	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13419838	0.90[AMR][1000 genomes]
rs13424818	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs17009140	0.83[AMR][1000 genomes]
rs60363102	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6547995	0.90[AMR][1000 genomes]
rs72861874	0.90[AMR][1000 genomes]
rs7561610	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7583803	0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533886	chr2:30130019-31068764	ZNF genes & repeats Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:30336000-30339000	Enhancers	NHLF	lung
2	chr2:30337000-30341600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr2:30338200-30339200	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr2:30338400-30339000	Enhancers	Brain Anterior Caudate	brain
5	chr2:30338600-30339000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
6	chr2:30338800-30341800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links