Variant report

Variant	rs13387960
Chromosome Location	chr2:30329709-30329710
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10171126	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10190925	0.90[AMR][1000 genomes]
rs13388821	0.91[AMR][1000 genomes]
rs13401621	1.00[AMR][1000 genomes]
rs13402417	0.91[AMR][1000 genomes]
rs13403955	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13414174	0.90[AMR][1000 genomes]
rs13415390	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs13415732	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13417286	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13419838	0.90[AMR][1000 genomes]
rs13424818	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs17009140	0.83[AMR][1000 genomes]
rs60363102	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6547995	0.90[AMR][1000 genomes]
rs72861874	0.90[AMR][1000 genomes]
rs7561610	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7583803	0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533886	chr2:30130019-31068764	ZNF genes & repeats Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:30327400-30337600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr2:30328400-30330200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr2:30328600-30329800	Enhancers	NH-A	brain
4	chr2:30328600-30329800	Enhancers	Osteobl	bone
5	chr2:30329200-30330800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr2:30329400-30329800	Enhancers	Left Ventricle	heart
7	chr2:30329400-30330600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr2:30329400-30332000	Enhancers	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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