Variant report

Variant	rs13415732
Chromosome Location	chr2:30334031-30334032
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10171126	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10190925	0.90[AMR][1000 genomes]
rs13387960	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13388821	0.91[AMR][1000 genomes]
rs13401621	1.00[AMR][1000 genomes]
rs13402417	0.91[AMR][1000 genomes]
rs13403955	1.00[AMR][1000 genomes]
rs13414174	0.90[AMR][1000 genomes]
rs13415390	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs13417286	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13419838	0.90[AMR][1000 genomes]
rs13424818	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs17009140	0.83[AMR][1000 genomes]
rs60363102	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6547995	0.90[AMR][1000 genomes]
rs72861874	0.90[AMR][1000 genomes]
rs7561610	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7583803	0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533886	chr2:30130019-31068764	ZNF genes & repeats Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:30327400-30337600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr2:30331400-30335600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr2:30332000-30336200	Weak transcription	HepG2	liver
4	chr2:30332600-30334400	Enhancers	HMEC	breast
5	chr2:30333000-30335600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr2:30333200-30336000	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr2:30333400-30334200	Enhancers	NHEK	skin
8	chr2:30333400-30336400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr2:30333600-30334400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr2:30333600-30336200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr2:30333600-30336200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr2:30333800-30334200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr2:30334000-30336200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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