Variant report

Variant	rs13402417
Chromosome Location	chr2:30321283-30321284
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10171126	0.91[AMR][1000 genomes]
rs10190925	0.81[AMR][1000 genomes]
rs13387960	0.91[AMR][1000 genomes]
rs13388821	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13401621	0.91[AMR][1000 genomes]
rs13403955	0.91[AMR][1000 genomes]
rs13414174	0.81[AMR][1000 genomes]
rs13415390	0.82[AMR][1000 genomes]
rs13415732	0.91[AMR][1000 genomes]
rs13417286	0.91[AMR][1000 genomes]
rs13419838	0.81[AMR][1000 genomes]
rs13424818	1.00[AMR][1000 genomes]
rs17009140	0.91[AMR][1000 genomes]
rs60363102	0.91[AMR][1000 genomes]
rs6547995	0.81[AMR][1000 genomes]
rs72861874	0.81[AMR][1000 genomes]
rs7561610	0.91[AMR][1000 genomes]
rs7583803	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533886	chr2:30130019-31068764	ZNF genes & repeats Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:30320200-30321600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr2:30321200-30321400	Bivalent Enhancer	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
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