Variant report

Variant	rs1341287
Chromosome Location	chr1:223497882-223497883
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:223471938..223473458-chr1:223497150..223499757,2	K562	blood:
2	chr1:223497129..223500114-chr1:223509294..223511393,2	K562	blood:
3	chr1:223496498..223499043-chr1:223513776..223516102,2	K562	blood:
4	chr1:223497612..223499362-chr1:223501611..223504069,2	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1019278	1.00[AMR][1000 genomes]
rs11488546	1.00[AMR][1000 genomes]
rs1713218	1.00[AMR][1000 genomes]
rs1772272	1.00[EUR][1000 genomes]
rs2253649	1.00[AMR][1000 genomes]
rs2487832	1.00[AMR][1000 genomes]
rs28584917	1.00[AMR][1000 genomes]
rs5744162	1.00[AMR][1000 genomes]
rs60933808	1.00[EUR][1000 genomes]
rs61737415	1.00[AMR][1000 genomes]
rs73118103	1.00[AMR][1000 genomes]
rs73118104	1.00[AMR][1000 genomes]
rs73118106	1.00[AMR][1000 genomes]
rs73118108	1.00[AMR][1000 genomes]
rs73118111	1.00[AMR][1000 genomes]
rs73118118	1.00[AMR][1000 genomes]
rs73118120	1.00[AMR][1000 genomes]
rs73118121	1.00[AMR][1000 genomes]
rs73120209	1.00[AMR][1000 genomes]
rs73120240	1.00[AMR][1000 genomes]
rs73120248	1.00[AMR][1000 genomes]
rs73120252	1.00[AMR][1000 genomes]
rs73120270	1.00[AMR][1000 genomes]
rs73120271	1.00[AMR][1000 genomes]
rs73120274	1.00[AMR][1000 genomes]
rs73120283	1.00[AMR][1000 genomes]
rs73120288	1.00[AMR][1000 genomes]
rs73122203	1.00[AMR][1000 genomes]
rs73122204	1.00[AMR][1000 genomes]
rs73122205	1.00[AMR][1000 genomes]
rs73122207	1.00[AMR][1000 genomes]
rs73122216	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73122222	1.00[AMR][1000 genomes]
rs73122236	1.00[AMR][1000 genomes]
rs73122239	1.00[AMR][1000 genomes]
rs73122273	1.00[EUR][1000 genomes]
rs73124209	1.00[EUR][1000 genomes]
rs73124222	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73124228	1.00[EUR][1000 genomes]
rs73126122	1.00[EUR][1000 genomes]
rs825119	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012537	chr1:222755091-223512243	Weak transcription Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv1000039	chr1:223429733-223527845	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:223495200-223498400	Enhancers	Fetal Thymus	thymus
2	chr1:223495600-223498400	Enhancers	Primary T cells from cord blood	blood
3	chr1:223495600-223498400	Enhancers	Thymus	Thymus
4	chr1:223495800-223498200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr1:223496000-223498000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
6	chr1:223496000-223498200	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr1:223496000-223498600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr1:223496200-223498200	Enhancers	Primary T cells fromperipheralblood	blood
9	chr1:223496200-223498200	Enhancers	Primary T helper cells PMA-I stimulated	--
10	chr1:223496400-223498200	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr1:223496400-223498200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr1:223496400-223498400	Enhancers	Primary T killer memory cells from peripheral blood	blood
13	chr1:223497200-223498000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr1:223497200-223504200	Weak transcription	Right Atrium	heart
15	chr1:223497200-223512600	Weak transcription	Pancreas	Pancrea
16	chr1:223497400-223498000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
17	chr1:223497400-223510400	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr1:223497600-223498400	Enhancers	Dnd41	blood
19	chr1:223497600-223504400	Weak transcription	Fetal Heart	heart
20	chr1:223497800-223498200	Enhancers	Primary hematopoietic stem cells	blood

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