The 2.0 version of rSNPBase

Variant report

Variant rs5744162
Chromosome Location chr1:223305505-223305506
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:43 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:223277000-223306800 Weak transcription Primary T cells from cord blood blood
2 chr1:223297200-223307000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
3 chr1:223297200-223307000 Weak transcription Aorta Aorta
4 chr1:223297600-223306800 Weak transcription Breast Myoepithelial Primary Cells Breast
5 chr1:223302600-223306400 Weak transcription Fetal Intestine Large intestine
6 chr1:223302800-223306800 Weak transcription Colon Smooth Muscle Colon
7 chr1:223303000-223306600 Weak transcription Lung lung
8 chr1:223303000-223306800 Weak transcription Primary T regulatory cells fromperipheralblood blood
9 chr1:223303000-223306800 Weak transcription Primary T killer naive cells fromperipheralblood blood
10 chr1:223303000-223306800 Weak transcription Esophagus oesophagus
11 chr1:223303000-223306800 Weak transcription Psoas Muscle Psoas
12 chr1:223303000-223306800 Weak transcription Right Atrium heart
13 chr1:223303000-223306800 Weak transcription Stomach Mucosa stomach
14 chr1:223303000-223307400 Weak transcription Left Ventricle heart
15 chr1:223303200-223306000 Strong transcription Primary monocytes fromperipheralblood blood
16 chr1:223303200-223306200 Weak transcription Duodenum Mucosa Duodenum
17 chr1:223303200-223306600 Weak transcription Liver Liver
18 chr1:223303200-223306600 Weak transcription Brain Angular Gyrus brain
19 chr1:223303200-223306600 Weak transcription Pancreas Pancrea
20 chr1:223303200-223306600 Weak transcription Placenta Amnion Placenta Amnion
21 chr1:223303200-223306600 Weak transcription Skeletal Muscle Male skeletal muscle
22 chr1:223303200-223306800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
23 chr1:223303200-223306800 Weak transcription Primary T helper naive cells from peripheral blood blood
24 chr1:223303200-223306800 Weak transcription Primary T helper cells fromperipheralblood blood
25 chr1:223303200-223306800 Weak transcription Primary T killer memory cells from peripheral blood blood
26 chr1:223303200-223306800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
27 chr1:223303200-223306800 Weak transcription Adipose Nuclei Adipose
28 chr1:223303200-223306800 Weak transcription Colonic Mucosa Colon
29 chr1:223303200-223306800 Weak transcription Gastric stomach
30 chr1:223303200-223306800 Weak transcription Rectal Smooth Muscle rectum
31 chr1:223303200-223306800 Weak transcription Skeletal Muscle Female skeletal muscle
32 chr1:223303200-223306800 Weak transcription Stomach Smooth Muscle stomach
33 chr1:223303200-223307000 Weak transcription Primary T helper naive cells fromperipheralblood blood
34 chr1:223303200-223307000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
35 chr1:223303200-223314600 Weak transcription Spleen Spleen
36 chr1:223303400-223306400 Weak transcription Pancreatic Islets Pancreatic Islet
37 chr1:223303400-223306600 Weak transcription Brain Anterior Caudate brain
38 chr1:223303600-223306600 Strong transcription Monocytes-CD14+_RO01746 blood
39 chr1:223303800-223307000 Weak transcription NHEK skin
40 chr1:223304000-223306800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
41 chr1:223304400-223306200 Strong transcription Primary neutrophils fromperipheralblood blood
42 chr1:223304800-223306600 Weak transcription Fetal Muscle Trunk muscle
43 chr1:223305200-223306800 Weak transcription Ovary ovary

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Last update: Aug 31, 2015