Variant report

Variant	rs13413716
Chromosome Location	chr2:187588652-187588653
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:187586395..187588666-chr2:187589274..187592197,2	K562	blood:
2	chr2:187586601..187588975-chr2:187605009..187606836,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10178617	1.00[CEU][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10205569	1.00[YRI][hapmap]
rs10211436	1.00[ASN][1000 genomes]
rs13407063	1.00[ASN][1000 genomes]
rs13422838	1.00[CEU][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13430921	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17406098	1.00[CEU][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2122176	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2442317	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2594700	1.00[CEU][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2594701	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2595380	0.80[CEU][hapmap];0.85[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2595381	0.80[CEU][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2595382	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2595391	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2595392	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2595394	0.85[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2595398	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2682849	1.00[YRI][hapmap]
rs2682850	0.85[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2682851	1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2682855	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2682857	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2682862	0.85[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2682875	1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28616716	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3114944	1.00[ASN][1000 genomes]
rs55666589	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56088351	0.89[EUR][1000 genomes]
rs62196179	1.00[ASN][1000 genomes]
rs62197740	1.00[ASN][1000 genomes]
rs62200585	1.00[ASN][1000 genomes]
rs7564965	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428069	chr2:187575692-187766209	ZNF genes & repeats Weak transcription Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:187583800-187588800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr2:187584400-187589000	Weak transcription	Brain Angular Gyrus	brain
3	chr2:187584400-187590400	Weak transcription	Brain Hippocampus Middle	brain
4	chr2:187584600-187590200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr2:187584600-187590600	Weak transcription	Fetal Brain Female	brain
6	chr2:187584600-187591600	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr2:187584600-187591800	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr2:187584600-187596000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr2:187587600-187588800	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr2:187587600-187589200	Weak transcription	Brain Anterior Caudate	brain
11	chr2:187587600-187590400	Weak transcription	Brain Cingulate Gyrus	brain
12	chr2:187588000-187590400	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr2:187588400-187589400	Enhancers	Fetal Brain Male	brain
14	chr2:187588400-187591000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr2:187588600-187589600	Genic enhancers	Brain Substantia Nigra	brain

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