The 2.0 version of rSNPBase

Variant report

Variant rs17406098
Chromosome Location chr2:187520330-187520331
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:118 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:187456200-187533000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
2 chr2:187456800-187534400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
3 chr2:187457200-187533800 Weak transcription Spleen Spleen
4 chr2:187458000-187529000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
5 chr2:187464800-187536200 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
6 chr2:187465800-187529200 Weak transcription Dnd41 blood
7 chr2:187466800-187533200 Weak transcription Colonic Mucosa Colon
8 chr2:187467200-187528600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
9 chr2:187471600-187521000 Weak transcription Aorta Aorta
10 chr2:187476800-187536200 Weak transcription Fetal Brain Male brain
11 chr2:187482200-187533800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
12 chr2:187482800-187527800 Weak transcription Skeletal Muscle Male skeletal muscle
13 chr2:187482800-187533200 Weak transcription Brain Inferior Temporal Lobe brain
14 chr2:187482800-187533600 Weak transcription Rectal Smooth Muscle rectum
15 chr2:187482800-187533800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
16 chr2:187482800-187533800 Weak transcription Psoas Muscle Psoas
17 chr2:187486600-187531400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
18 chr2:187489400-187534400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
19 chr2:187493800-187529200 Weak transcription Brain Substantia Nigra brain
20 chr2:187494200-187529200 Weak transcription Brain Germinal Matrix brain
21 chr2:187494200-187535800 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
22 chr2:187494800-187531800 Weak transcription Brain Cingulate Gyrus brain
23 chr2:187495000-187534400 Weak transcription ES-I3 Cell Line embryonic stem cell
24 chr2:187501000-187548400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
25 chr2:187502800-187533000 Weak transcription H9 Cell Line embryonic stem cell
26 chr2:187503400-187545000 Weak transcription Hela-S3 cervix
27 chr2:187504200-187529400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
28 chr2:187505400-187522200 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
29 chr2:187505400-187533400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
30 chr2:187505600-187527600 Weak transcription Fetal Heart heart
31 chr2:187505800-187528800 Weak transcription Stomach Mucosa stomach
32 chr2:187506600-187529600 Weak transcription Primary neutrophils fromperipheralblood blood
33 chr2:187506600-187533400 Weak transcription NHLF lung
34 chr2:187506600-187537000 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
35 chr2:187507200-187529200 Weak transcription Fetal Brain Female brain
36 chr2:187507400-187529000 Weak transcription Primary T cells from cord blood blood
37 chr2:187507800-187529200 Weak transcription GM12878-XiMat blood
38 chr2:187507800-187546600 Weak transcription Small Intestine intestine
39 chr2:187508000-187529200 Weak transcription NHEK skin
40 chr2:187508600-187521200 Weak transcription Primary monocytes fromperipheralblood blood
41 chr2:187509000-187521000 Weak transcription Fetal Lung lung
42 chr2:187509000-187521400 Weak transcription Esophagus oesophagus
43 chr2:187509800-187521000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
44 chr2:187509800-187521000 Weak transcription Fetal Thymus thymus
45 chr2:187510200-187521400 Weak transcription Colon Smooth Muscle Colon
46 chr2:187510200-187529200 Weak transcription Pancreas Pancrea
47 chr2:187510400-187521000 Weak transcription Fetal Muscle Leg muscle
48 chr2:187510800-187535000 Weak transcription Primary T helper naive cells from peripheral blood blood
49 chr2:187511200-187536200 Strong transcription HUES64 Cell Line embryonic stem cell
50 chr2:187511400-187546600 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow

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Last update: Aug 31, 2015