Variant report
| Variant | rs13415842 |
|---|---|
| Chromosome Location | chr2:53960947-53960948 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:53908600-53982200 | Weak transcription | Small Intestine | intestine |
| 2 | chr2:53910000-53994000 | Weak transcription | Primary T helper memory cells from peripheral blood 2 | blood |
| 3 | chr2:53910200-53990600 | Weak transcription | Primary T killer memory cells from peripheral blood | blood |
| 4 | chr2:53918400-53994000 | Weak transcription | Fetal Heart | heart |
| 5 | chr2:53925400-53979400 | Weak transcription | Psoas Muscle | Psoas |
| 6 | chr2:53936600-53968400 | Weak transcription | Pancreas | Pancrea |
| 7 | chr2:53936600-53978600 | Weak transcription | Hela-S3 | cervix |
| 8 | chr2:53936800-53985400 | Weak transcription | Stomach Smooth Muscle | stomach |
| 9 | chr2:53937000-53983800 | Weak transcription | Brain Dorsolateral Prefrontal Cortex | brain |
| 10 | chr2:53937000-53994400 | Weak transcription | Placenta Amnion | Placenta Amnion |
| 11 | chr2:53937200-53961400 | Weak transcription | Foreskin Fibroblast Primary Cells skin01 | Skin |
| 12 | chr2:53937200-53964400 | Weak transcription | Aorta | Aorta |
| 13 | chr2:53937200-53966800 | Weak transcription | Gastric | stomach |
| 14 | chr2:53937200-53978600 | Weak transcription | NH-A | brain |
| 15 | chr2:53937200-53983600 | Weak transcription | Right Ventricle | heart |
| 16 | chr2:53937200-53994200 | Weak transcription | Primary T cells effector/memory enriched fromperipheralblood | blood |
| 17 | chr2:53937400-53964000 | Weak transcription | Primary T helper 17 cells PMA-I stimulated | -- |
| 18 | chr2:53937400-53979600 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
| 19 | chr2:53937400-53990200 | Weak transcription | Primary T helper naive cells from peripheral blood | blood |
| 20 | chr2:53937400-53994400 | Weak transcription | Primary T killer naive cells fromperipheralblood | blood |
| 21 | chr2:53937600-53961600 | Weak transcription | Bone Marrow Derived Cultured Mesenchymal Stem Cells | Bone marrow |
| 22 | chr2:53938000-53961400 | Weak transcription | NHEK | skin |
| 23 | chr2:53938000-53974800 | Weak transcription | H1 Cell Line | embryonic stem cell |
| 24 | chr2:53938000-53974800 | Weak transcription | Placenta | Placenta |
| 25 | chr2:53938200-53967000 | Weak transcription | Foreskin Keratinocyte Primary Cells skin02 | Skin |
| 26 | chr2:53938200-53975200 | Weak transcription | Duodenum Mucosa | Duodenum |
| 27 | chr2:53938400-53963600 | Weak transcription | Foreskin Keratinocyte Primary Cells skin03 | Skin |
| 28 | chr2:53938400-53969400 | Weak transcription | Rectal Smooth Muscle | rectum |
| 29 | chr2:53938400-53969600 | Weak transcription | Esophagus | oesophagus |
| 30 | chr2:53938400-53975000 | Weak transcription | Fetal Kidney | kidney |
| 31 | chr2:53938400-53982800 | Weak transcription | HUES48 Cell Line | embryonic stem cell |
| 32 | chr2:53938400-53983400 | Weak transcription | HSMMtube | muscle |
| 33 | chr2:53938400-53992400 | Weak transcription | K562 | blood |
| 34 | chr2:53938600-53961000 | Weak transcription | HUES6 Cell Line | embryonic stem cell |
| 35 | chr2:53938600-53972000 | Weak transcription | HSMM | muscle |
| 36 | chr2:53941800-53974400 | Weak transcription | iPS-20b Cell Line | embryonic stem cell |
| 37 | chr2:53941800-53976400 | Weak transcription | Colon Smooth Muscle | Colon |
| 38 | chr2:53943800-53974800 | Weak transcription | Rectal Mucosa Donor 29 | rectum |
| 39 | chr2:53943800-53983600 | Weak transcription | Ovary | ovary |
| 40 | chr2:53943800-53983600 | Weak transcription | Thymus | Thymus |
| 41 | chr2:53943800-53983800 | Weak transcription | Left Ventricle | heart |
| 42 | chr2:53944000-53974600 | Weak transcription | Duodenum Smooth Muscle | Duodenum |
| 43 | chr2:53945800-53968400 | Weak transcription | Brain Anterior Caudate | brain |
| 44 | chr2:53949800-53974200 | Weak transcription | HUES64 Cell Line | embryonic stem cell |
| 45 | chr2:53952200-53978600 | Weak transcription | Osteobl | bone |
| 46 | chr2:53952400-53983600 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
| 47 | chr2:53952600-53974800 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 48 | chr2:53952800-53961200 | Weak transcription | Brain Germinal Matrix | brain |
| 49 | chr2:53954000-53963000 | Strong transcription | H9 Derived Neuron Cultured Cells | ES cell derived |
| 50 | chr2:53954400-53972000 | Weak transcription | NHDF-Ad | bronchial |
