Variant report

Variant	rs13417574
Chromosome Location	chr2:100829171-100829172
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:100828123..100832534-chr2:100834410..100837969,5	K562	blood:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10169580	1.00[EUR][1000 genomes]
rs10178929	1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs10183462	1.00[EUR][1000 genomes]
rs10186689	1.00[EUR][1000 genomes]
rs10188619	1.00[EUR][1000 genomes]
rs10190243	1.00[EUR][1000 genomes]
rs10191099	1.00[EUR][1000 genomes]
rs10191655	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10193186	1.00[EUR][1000 genomes]
rs10194087	1.00[EUR][1000 genomes]
rs10194280	1.00[EUR][1000 genomes]
rs10197013	1.00[EUR][1000 genomes]
rs10205784	1.00[EUR][1000 genomes]
rs10207091	1.00[EUR][1000 genomes]
rs10207566	1.00[EUR][1000 genomes]
rs1107428	1.00[EUR][1000 genomes]
rs11123831	1.00[EUR][1000 genomes]
rs12329351	1.00[EUR][1000 genomes]
rs13391540	1.00[EUR][1000 genomes]
rs13407391	1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs13413021	1.00[EUR][1000 genomes]
rs13416287	1.00[EUR][1000 genomes]
rs13427376	1.00[EUR][1000 genomes]
rs17023418	1.00[EUR][1000 genomes]
rs17023423	1.00[EUR][1000 genomes]
rs17023450	1.00[EUR][1000 genomes]
rs28485289	1.00[EUR][1000 genomes]
rs28549897	1.00[EUR][1000 genomes]
rs28631885	1.00[EUR][1000 genomes]
rs28757637	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4597550	1.00[EUR][1000 genomes]
rs56377332	1.00[EUR][1000 genomes]
rs57231149	1.00[EUR][1000 genomes]
rs60292856	1.00[EUR][1000 genomes]
rs62148083	0.82[AFR][1000 genomes]
rs6542927	1.00[EUR][1000 genomes]
rs6542928	1.00[EUR][1000 genomes]
rs6542935	1.00[EUR][1000 genomes]
rs6734881	1.00[EUR][1000 genomes]
rs6742048	1.00[EUR][1000 genomes]
rs6743560	1.00[EUR][1000 genomes]
rs6755284	1.00[EUR][1000 genomes]
rs72954123	1.00[EUR][1000 genomes]
rs72966498	1.00[EUR][1000 genomes]
rs72968866	1.00[EUR][1000 genomes]
rs73964443	1.00[EUR][1000 genomes]
rs73968406	1.00[EUR][1000 genomes]
rs7563954	1.00[EUR][1000 genomes]
rs7569334	1.00[EUR][1000 genomes]
rs7580252	1.00[MEX][hapmap]
rs7585806	1.00[EUR][1000 genomes]
rs9808480	1.00[EUR][1000 genomes]
rs995110	1.00[EUR][1000 genomes]
rs995132	1.00[EUR][1000 genomes]
rs995133	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003343	chr2:100241560-100848900	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv535843	chr2:100241560-100848900	Genic enhancers Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1007777	chr2:100816913-101308914	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
4	nsv535844	chr2:100816913-101308914	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
5	nsv834311	chr2:100816917-100990036	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:100822200-100830200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr2:100822200-100830400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr2:100822400-100830200	Weak transcription	Lung	lung
4	chr2:100824200-100829200	Weak transcription	Right Ventricle	heart
5	chr2:100824400-100830400	Weak transcription	Right Atrium	heart
6	chr2:100824800-100829200	Weak transcription	Colon Smooth Muscle	Colon
7	chr2:100825200-100830000	Weak transcription	Ovary	ovary
8	chr2:100825200-100832400	Weak transcription	Fetal Brain Female	brain
9	chr2:100825400-100829200	Weak transcription	Fetal Muscle Leg	muscle
10	chr2:100825400-100830200	Weak transcription	Fetal Muscle Trunk	muscle
11	chr2:100826400-100830200	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr2:100826400-100832200	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr2:100827800-100830400	Enhancers	Skeletal Muscle Male	skeletal muscle
14	chr2:100827800-100832200	Enhancers	Psoas Muscle	Psoas
15	chr2:100827800-100832200	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr2:100828200-100829400	Weak transcription	Adipose Nuclei	Adipose
17	chr2:100828400-100829400	Weak transcription	Fetal Lung	lung
18	chr2:100828600-100830200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr2:100828800-100830200	Weak transcription	Primary neutrophils fromperipheralblood	blood
20	chr2:100828800-100832400	Enhancers	Fetal Heart	heart
21	chr2:100829000-100831000	Enhancers	Duodenum Mucosa	Duodenum
22	chr2:100829000-100831600	Enhancers	Placenta	Placenta
23	chr2:100829000-100832200	Enhancers	Breast Myoepithelial Primary Cells	Breast
24	chr2:100829000-100832400	Enhancers	Left Ventricle	heart

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