Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10169580	1.00[EUR][1000 genomes]
rs10178929	1.00[EUR][1000 genomes]
rs10191099	1.00[EUR][1000 genomes]
rs10191655	1.00[EUR][1000 genomes]
rs10194087	1.00[EUR][1000 genomes]
rs10194280	1.00[EUR][1000 genomes]
rs10197013	1.00[EUR][1000 genomes]
rs13407391	1.00[EUR][1000 genomes]
rs13413021	1.00[EUR][1000 genomes]
rs13414915	1.00[AMR][1000 genomes]
rs13416287	1.00[EUR][1000 genomes]
rs13417574	1.00[EUR][1000 genomes]
rs13427376	1.00[EUR][1000 genomes]
rs17023418	1.00[EUR][1000 genomes]
rs17023423	1.00[EUR][1000 genomes]
rs17023450	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28757637	1.00[EUR][1000 genomes]
rs6542927	1.00[EUR][1000 genomes]
rs6542928	1.00[EUR][1000 genomes]
rs6734881	1.00[EUR][1000 genomes]
rs6743560	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72954123	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72968866	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7563954	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003343	chr2:100241560-100848900	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv535843	chr2:100241560-100848900	Genic enhancers Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv458707	chr2:100687778-100753490	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv582529	chr2:100687778-100753490	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:100730200-100742200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr2:100730800-100746400	Weak transcription	Spleen	Spleen
3	chr2:100731800-100742000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr2:100732000-100749400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr2:100732000-100754400	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr2:100732200-100736000	Weak transcription	Primary T cells from cord blood	blood
7	chr2:100732400-100736000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr2:100734000-100736800	ZNF genes & repeats	Primary B cells from cord blood	blood
9	chr2:100734400-100748000	Weak transcription	Adipose Nuclei	Adipose
10	chr2:100734600-100737600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr2:100734600-100742200	Weak transcription	Pancreas	Pancrea
12	chr2:100735000-100741000	Strong transcription	Dnd41	blood
13	chr2:100735200-100736600	Genic enhancers	Primary B cells from peripheral blood	blood
14	chr2:100735200-100736800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr2:100735400-100737400	Strong transcription	Thymus	Thymus
16	chr2:100735600-100736200	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
17	chr2:100735600-100738200	Strong transcription	Fetal Thymus	thymus
18	chr2:100735800-100744200	Strong transcription	Primary hematopoietic stem cells	blood

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