Variant report

Variant	rs13418291
Chromosome Location	chr2:30950563-30950564
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10211502	1.00[EUR][1000 genomes]
rs13390008	0.81[AFR][1000 genomes]
rs13416208	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs13423931	1.00[AFR][1000 genomes]
rs72867118	1.00[EUR][1000 genomes]
rs7355379	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533886	chr2:30130019-31068764	ZNF genes & repeats Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:30902400-30954000	Weak transcription	Gastric	stomach
2	chr2:30940600-30969600	Weak transcription	Stomach Mucosa	stomach
3	chr2:30943000-30951400	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr2:30945800-30955400	Weak transcription	Fetal Intestine Small	intestine
5	chr2:30946800-30953200	Weak transcription	Fetal Stomach	stomach
6	chr2:30947400-30953000	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr2:30950000-30954200	Weak transcription	Duodenum Mucosa	Duodenum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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