Variant report

Variant	rs13420414
Chromosome Location	chr2:31500300-31500301
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12468456	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13394691	1.00[ASN][1000 genomes]
rs13422633	1.00[ASN][1000 genomes]
rs17011230	1.00[ASN][1000 genomes]
rs17011262	1.00[ASN][1000 genomes]
rs17011265	1.00[ASN][1000 genomes]
rs55844041	1.00[ASN][1000 genomes]
rs55847034	1.00[ASN][1000 genomes]
rs60852132	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62140757	1.00[ASN][1000 genomes]
rs72786972	1.00[ASN][1000 genomes]
rs72786990	1.00[ASN][1000 genomes]
rs72786996	1.00[ASN][1000 genomes]
rs72786999	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948552	chr2:31118599-31595424	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:31463600-31501400	Weak transcription	Pancreas	Pancrea
2	chr2:31468200-31501600	Weak transcription	Primary hematopoietic stem cells	blood
3	chr2:31482000-31501000	Weak transcription	Fetal Intestine Large	intestine
4	chr2:31482600-31501400	Weak transcription	Liver	Liver
5	chr2:31486600-31510000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr2:31490000-31502400	Weak transcription	Spleen	Spleen
7	chr2:31492400-31507800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr2:31492800-31510600	Weak transcription	Aorta	Aorta
9	chr2:31494400-31505600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr2:31495800-31509800	Weak transcription	Esophagus	oesophagus
11	chr2:31497000-31501600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr2:31497000-31510400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr2:31497200-31502600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr2:31497400-31501000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr2:31498400-31500600	Weak transcription	Fetal Stomach	stomach
16	chr2:31498600-31502000	Weak transcription	Placenta	Placenta
17	chr2:31499200-31500400	Weak transcription	Fetal Lung	lung
18	chr2:31499600-31501600	Weak transcription	Right Ventricle	heart
19	chr2:31500000-31500400	Weak transcription	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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