Variant report

Variant	rs72786999
Chromosome Location	chr2:31527113-31527114
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12468456	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13394691	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13420414	1.00[ASN][1000 genomes]
rs13422633	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17011230	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17011262	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17011265	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55844041	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55847034	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55994653	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56060668	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs60852132	1.00[ASN][1000 genomes]
rs62140757	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72786972	0.94[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72786990	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72786996	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948552	chr2:31118599-31595424	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv949028	chr2:31502801-31665108	Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
3	esv2762446	chr2:31521093-31610311	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:31521000-31527200	Weak transcription	Aorta	Aorta
2	chr2:31522600-31528600	Weak transcription	Fetal Intestine Small	intestine
3	chr2:31522800-31527800	Enhancers	Fetal Heart	heart
4	chr2:31522800-31528200	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr2:31525000-31527400	Enhancers	Left Ventricle	heart
6	chr2:31525000-31527600	Enhancers	Fetal Lung	lung
7	chr2:31525400-31527400	Enhancers	Fetal Muscle Leg	muscle
8	chr2:31525600-31527400	Enhancers	Esophagus	oesophagus
9	chr2:31525800-31527400	Enhancers	Fetal Muscle Trunk	muscle
10	chr2:31526000-31527400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr2:31526200-31527200	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr2:31526400-31527400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr2:31526400-31527600	Enhancers	Right Ventricle	heart
14	chr2:31526600-31542400	Weak transcription	NHEK	skin
15	chr2:31526800-31542800	Weak transcription	HMEC	breast
16	chr2:31527000-31535600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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