Variant report

Variant	rs13420716
Chromosome Location	chr2:234492273-234492274
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
UGT1A12P	TF binding region
ENSG00000085982	Chromatin interaction
ENSG00000072080	Chromatin interaction
ENSG00000242515	Chromatin interaction
ENSG00000234143	Chromatin interaction
ENSG00000123485	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs28946889	1.00[YRI][hapmap]
rs72984414	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs750887	1.00[AMR][1000 genomes]
rs955938	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529419	chr2:234229606-234670426	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
2	nsv876013	chr2:234338227-234579915	Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	nsv428072	chr2:234393609-234624769	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
4	nsv519876	chr2:234466843-234493048	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:234486400-234494800	Weak transcription	A549	lung
2	chr2:234492000-234492600	Active TSS	HUES64 Cell Line	embryonic stem cell
3	chr2:234492200-234492400	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr2:234492200-234492600	Flanking Active TSS	H1 Cell Line	embryonic stem cell
5	chr2:234492200-234492600	Active TSS	iPS-18 Cell Line	embryonic stem cell
6	chr2:234492200-234492600	Active TSS	Breast Myoepithelial Primary Cells	Breast
7	chr2:234492200-234492600	Active TSS	Placenta	Placenta
8	chr2:234492200-234492600	Active TSS	Rectal Mucosa Donor 29	rectum
9	chr2:234492200-234492600	Active TSS	Rectal Mucosa Donor 31	rectum
10	chr2:234492200-234493000	Active TSS	ES-I3 Cell Line	embryonic stem cell
11	chr2:234492200-234493200	Active TSS	HUES6 Cell Line	embryonic stem cell
12	chr2:234492200-234493200	Active TSS	K562	blood
13	chr2:234492200-234493400	Active TSS	iPS-15b Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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