Variant report

Variant	rs13425664
Chromosome Location	chr2:189467163-189467164
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10175840	1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12328188	1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs696571	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs696572	1.00[AMR][1000 genomes]
rs698569	1.00[AMR][1000 genomes]
rs698572	1.00[AMR][1000 genomes]
rs781252	1.00[AMR][1000 genomes]
rs781256	1.00[AMR][1000 genomes]
rs781257	1.00[AMR][1000 genomes]
rs781258	1.00[AMR][1000 genomes]
rs781260	1.00[AMR][1000 genomes]
rs781266	1.00[AMR][1000 genomes]
rs781267	1.00[AMR][1000 genomes]
rs781270	1.00[AMR][1000 genomes]
rs781455	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv584055	chr2:189266823-189493686	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv834489	chr2:189329027-189494224	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv1003974	chr2:189331760-189827814	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:189450400-189470600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr2:189450400-189475000	Weak transcription	Aorta	Aorta
3	chr2:189461800-189470600	Weak transcription	Placenta	Placenta
4	chr2:189462800-189468200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr2:189463000-189467600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr2:189464200-189475400	Weak transcription	Right Atrium	heart
7	chr2:189464400-189474400	Weak transcription	Fetal Lung	lung
8	chr2:189466000-189467200	Enhancers	NHDF-Ad	bronchial
9	chr2:189466200-189472400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr2:189466600-189472000	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr2:189466600-189472200	Weak transcription	HSMM	muscle
12	chr2:189466800-189467200	Enhancers	NH-A	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links