Variant report

Variant	rs781455
Chromosome Location	chr2:189541302-189541303
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10175840	1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12328188	1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13425664	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1922803	0.85[AFR][1000 genomes]
rs4667252	1.00[YRI][hapmap]
rs696571	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs696572	1.00[AMR][1000 genomes]
rs698569	1.00[AMR][1000 genomes]
rs698572	1.00[AMR][1000 genomes]
rs7595716	1.00[YRI][hapmap]
rs781252	1.00[AMR][1000 genomes]
rs781256	1.00[AMR][1000 genomes]
rs781257	1.00[AMR][1000 genomes]
rs781258	1.00[AMR][1000 genomes]
rs781260	1.00[AMR][1000 genomes]
rs781266	1.00[AMR][1000 genomes]
rs781267	1.00[AMR][1000 genomes]
rs781270	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003974	chr2:189331760-189827814	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:189539400-189542400	Enhancers	HSMM	muscle
2	chr2:189539600-189543400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr2:189540000-189541400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr2:189540000-189541600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr2:189540000-189541600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr2:189540000-189542400	Enhancers	Osteobl	bone
7	chr2:189540200-189542200	Enhancers	NHDF-Ad	bronchial
8	chr2:189540800-189542400	Enhancers	Muscle Satellite Cultured Cells	--
9	chr2:189541200-189545000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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