Variant report

Variant	rs1922803
Chromosome Location	chr2:189748375-189748376
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1156090	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13385828	1.00[YRI][hapmap]
rs13421412	1.00[YRI][hapmap]
rs2708197	1.00[AMR][1000 genomes]
rs4667252	1.00[YRI][hapmap]
rs696571	0.85[AFR][1000 genomes]
rs696572	0.80[AFR][1000 genomes]
rs698569	0.80[AFR][1000 genomes]
rs698572	0.80[AFR][1000 genomes]
rs781257	0.80[AFR][1000 genomes]
rs781258	0.80[AFR][1000 genomes]
rs781260	0.80[AFR][1000 genomes]
rs781265	0.80[AFR][1000 genomes]
rs781266	0.80[AFR][1000 genomes]
rs781267	0.80[AFR][1000 genomes]
rs781270	0.80[AFR][1000 genomes]
rs781455	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003974	chr2:189331760-189827814	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1008847	chr2:189603961-189769705	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv997454	chr2:189615728-189770133	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1002175	chr2:189615728-189776301	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv834490	chr2:189703550-189840963	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:189739000-189755600	Weak transcription	Aorta	Aorta
2	chr2:189748200-189748600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr2:189748200-189748800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr2:189748200-189748800	Enhancers	Fetal Stomach	stomach
5	chr2:189748200-189749400	Enhancers	NHDF-Ad	bronchial
6	chr2:189748200-189749800	Enhancers	Fetal Lung	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links