Variant report

Variant	rs13426078
Chromosome Location	chr2:173219523-173219524
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11691210	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13391645	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13425570	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13428743	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35703952	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4972807	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62169683	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533927	chr2:173161637-173796894	Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173215600-173219800	Enhancers	Pancreas	Pancrea
2	chr2:173216000-173221000	Weak transcription	Fetal Thymus	thymus
3	chr2:173216200-173221400	Weak transcription	Spleen	Spleen
4	chr2:173216600-173221800	Weak transcription	HSMMtube	muscle
5	chr2:173216800-173222200	Weak transcription	Left Ventricle	heart
6	chr2:173216800-173223600	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr2:173217200-173222400	Weak transcription	Psoas Muscle	Psoas
8	chr2:173218000-173223200	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr2:173218600-173222400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr2:173219000-173219800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr2:173219000-173219800	Enhancers	Gastric	stomach
12	chr2:173219000-173219800	Enhancers	Stomach Mucosa	stomach
13	chr2:173219200-173219600	Enhancers	Right Atrium	heart
14	chr2:173219400-173219600	Enhancers	Lung	lung
15	chr2:173219400-173222200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr2:173219400-173222400	Weak transcription	Right Ventricle	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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