Variant report

Variant	rs62169683
Chromosome Location	chr2:173213284-173213285
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11691210	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13391645	0.84[EUR][1000 genomes]
rs13425570	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13426078	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13428743	0.84[EUR][1000 genomes]
rs35703952	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4246625	0.84[EUR][1000 genomes]
rs4552157	0.80[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs4972807	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6716471	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533927	chr2:173161637-173796894	Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173204600-173218400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr2:173207200-173219200	Weak transcription	Right Atrium	heart
3	chr2:173210400-173219000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr2:173210600-173213800	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr2:173211800-173213400	Weak transcription	Liver	Liver
6	chr2:173212800-173213400	Enhancers	Pancreas	Pancrea
7	chr2:173213200-173213400	Enhancers	Gastric	stomach
8	chr2:173213200-173214200	Enhancers	Skeletal Muscle Male	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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