Variant report

Variant	rs13426704
Chromosome Location	chr2:72900885-72900886
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs13391821	0.82[AFR][1000 genomes]
rs13429668	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874264	chr2:72593243-72901170	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv874265	chr2:72789764-72982609	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:72858400-72904000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr2:72866800-72902600	Weak transcription	Left Ventricle	heart
3	chr2:72873000-72903800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr2:72892000-72905400	Weak transcription	Pancreas	Pancrea
5	chr2:72895400-72902600	Weak transcription	Fetal Lung	lung
6	chr2:72895800-72901200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr2:72895800-72903400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr2:72896000-72905400	Weak transcription	Psoas Muscle	Psoas
9	chr2:72896800-72903800	Weak transcription	NHEK	skin
10	chr2:72896800-72943000	Weak transcription	Primary T cells from cord blood	blood
11	chr2:72897000-72903400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr2:72897000-72903400	Weak transcription	NHDF-Ad	bronchial
13	chr2:72897000-72904000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr2:72897000-72905200	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr2:72897000-72912600	Weak transcription	NHLF	lung
16	chr2:72897200-72902200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr2:72897800-72909800	Weak transcription	Brain Germinal Matrix	brain
18	chr2:72899400-72903400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr2:72899400-72905400	Weak transcription	Right Ventricle	heart
20	chr2:72899800-72901200	Enhancers	Fetal Intestine Small	intestine
21	chr2:72900000-72901000	Active TSS	A549	lung
22	chr2:72900000-72903400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr2:72900000-72905400	Weak transcription	Small Intestine	intestine
24	chr2:72900200-72901400	Enhancers	HepG2	liver
25	chr2:72900200-72902200	Weak transcription	Liver	Liver
26	chr2:72900200-72911800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr2:72900400-72901400	Enhancers	Fetal Heart	heart
28	chr2:72900400-72901800	Enhancers	Fetal Intestine Large	intestine
29	chr2:72900400-72901800	Enhancers	Stomach Mucosa	stomach
30	chr2:72900600-72902600	Weak transcription	Ovary	ovary
31	chr2:72900600-72903000	Weak transcription	Brain Hippocampus Middle	brain
32	chr2:72900800-72901600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr2:72900800-72903400	Weak transcription	Brain Inferior Temporal Lobe	brain

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