Variant report

Variant	rs13429668
Chromosome Location	chr2:72843345-72843346
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10203912	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs13391821	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs13397743	1.00[YRI][hapmap]
rs13413528	0.90[YRI][hapmap];0.81[AFR][1000 genomes]
rs13414291	0.90[YRI][hapmap]
rs13419598	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs13426704	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2203679	1.00[YRI][hapmap]
rs4852886	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874264	chr2:72593243-72901170	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv834257	chr2:72701083-72853548	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv874265	chr2:72789764-72982609	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:72834000-72843600	Weak transcription	Fetal Intestine Small	intestine
2	chr2:72836800-72843600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr2:72840000-72854400	Weak transcription	Ovary	ovary
4	chr2:72840200-72846000	Weak transcription	Fetal Lung	lung
5	chr2:72840200-72878600	Weak transcription	Aorta	Aorta
6	chr2:72842000-72847000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr2:72842200-72849800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr2:72842400-72843400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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