Variant report

Variant	rs13414291
Chromosome Location	chr2:73027558-73027559
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10170993	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10190863	1.00[AMR][1000 genomes]
rs10203912	1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13391821	1.00[YRI][hapmap]
rs13413528	1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13419598	1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13429668	0.90[YRI][hapmap]
rs28793596	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4852886	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834259	chr2:72941118-73114106	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:73014000-73033400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr2:73016400-73035600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr2:73016600-73035800	Weak transcription	Left Ventricle	heart
4	chr2:73022000-73028000	Weak transcription	Duodenum Mucosa	Duodenum
5	chr2:73022000-73030000	Weak transcription	Brain Cingulate Gyrus	brain
6	chr2:73022200-73029800	Weak transcription	Brain Substantia Nigra	brain
7	chr2:73022400-73028800	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr2:73022400-73030000	Weak transcription	NHDF-Ad	bronchial
9	chr2:73022400-73042200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr2:73023400-73035800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr2:73024400-73030600	Weak transcription	Fetal Heart	heart
12	chr2:73025600-73030000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr2:73026600-73028000	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr2:73026600-73035200	Weak transcription	Primary T cells from cord blood	blood
15	chr2:73026800-73035000	Weak transcription	Rectal Mucosa Donor 29	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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