Variant report

Variant	rs13428099
Chromosome Location	chr2:208954241-208954242
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10192860	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10497895	0.93[EUR][1000 genomes]
rs10932224	0.91[EUR][1000 genomes]
rs12464255	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12465052	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12470702	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16840403	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17538061	0.92[EUR][1000 genomes]
rs17538138	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2362787	0.86[EUR][1000 genomes]
rs57709782	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs60335988	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62192772	0.84[EUR][1000 genomes]
rs62192773	0.84[EUR][1000 genomes]
rs62192790	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62192791	0.93[EUR][1000 genomes]
rs62192812	0.92[EUR][1000 genomes]
rs62192814	0.95[EUR][1000 genomes]
rs62192815	0.95[EUR][1000 genomes]
rs62192816	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62192818	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72981543	0.88[EUR][1000 genomes]
rs72984907	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72984917	0.92[EUR][1000 genomes]
rs72984926	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72984930	0.94[EUR][1000 genomes]
rs72984932	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010531	chr2:208610639-209176782	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv536130	chr2:208610639-209176782	Weak transcription Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv534496	chr2:208814372-209302791	Strong transcription Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
4	nsv875744	chr2:208952810-208994045	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:208951600-208957800	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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