Variant report

Variant	rs2362787
Chromosome Location	chr2:208911486-208911487
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:208905718..208908340-chr2:208910863..208912416,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10192860	0.87[EUR][1000 genomes]
rs10497895	0.93[EUR][1000 genomes]
rs10932224	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12464255	0.93[EUR][1000 genomes]
rs12465052	0.93[EUR][1000 genomes]
rs12465292	0.83[EUR][1000 genomes]
rs12470702	0.93[EUR][1000 genomes]
rs13428099	0.86[EUR][1000 genomes]
rs16840403	0.93[EUR][1000 genomes]
rs17459758	0.80[EUR][1000 genomes]
rs17538061	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17538138	0.91[EUR][1000 genomes]
rs28463196	0.80[EUR][1000 genomes]
rs57709782	0.93[EUR][1000 genomes]
rs60335988	0.93[EUR][1000 genomes]
rs62190896	0.80[EUR][1000 genomes]
rs62190898	0.81[EUR][1000 genomes]
rs62190900	0.83[EUR][1000 genomes]
rs62190904	0.83[EUR][1000 genomes]
rs62190905	0.83[EUR][1000 genomes]
rs62192772	0.93[EUR][1000 genomes]
rs62192773	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62192790	0.93[EUR][1000 genomes]
rs62192791	0.93[EUR][1000 genomes]
rs62192812	0.89[EUR][1000 genomes]
rs62192814	0.91[EUR][1000 genomes]
rs62192815	0.91[EUR][1000 genomes]
rs62192816	0.91[EUR][1000 genomes]
rs62192818	0.89[EUR][1000 genomes]
rs6435402	0.80[EUR][1000 genomes]
rs6740362	0.80[EUR][1000 genomes]
rs72981543	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72984907	0.91[EUR][1000 genomes]
rs72984917	0.89[EUR][1000 genomes]
rs72984926	0.91[EUR][1000 genomes]
rs72984930	0.89[EUR][1000 genomes]
rs72984932	0.89[EUR][1000 genomes]
rs7565251	0.83[EUR][1000 genomes]
rs7588162	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010531	chr2:208610639-209176782	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv536130	chr2:208610639-209176782	Weak transcription Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv875743	chr2:208688648-208940023	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv534496	chr2:208814372-209302791	Strong transcription Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:208899000-208912000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:208907000-208912000	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr2:208907000-208913800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr2:208909800-208912000	Weak transcription	HepG2	liver
5	chr2:208911400-208912800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links