Variant report

Variant	rs1342973
Chromosome Location	chr6:81681232-81681233
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:81681010..81683016-chr6:81684816..81687356,2	MCF-7	breast:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10485280	0.81[EUR][1000 genomes]
rs1114632	0.81[EUR][1000 genomes]
rs1114633	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1337666	0.81[EUR][1000 genomes]
rs1337667	0.81[EUR][1000 genomes]
rs1884933	0.81[EUR][1000 genomes]
rs2064867	0.81[EUR][1000 genomes]
rs2064868	0.81[EUR][1000 genomes]
rs2078490	0.81[EUR][1000 genomes]
rs2096236	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2166034	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2752960	0.81[EUR][1000 genomes]
rs2786702	0.81[EUR][1000 genomes]
rs500554	0.81[EUR][1000 genomes]
rs516854	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs525114	0.81[EUR][1000 genomes]
rs533393	0.88[AFR][1000 genomes]
rs6454197	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7738775	0.81[EUR][1000 genomes]
rs7743338	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7744074	0.94[EUR][1000 genomes]
rs7744466	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7751041	0.80[EUR][1000 genomes]
rs7765210	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7770169	0.81[EUR][1000 genomes]
rs7770677	0.81[EUR][1000 genomes]
rs7770832	0.81[EUR][1000 genomes]
rs9294184	0.81[EUR][1000 genomes]
rs9294186	0.81[EUR][1000 genomes]
rs9341836	0.81[EUR][1000 genomes]
rs9344072	0.81[EUR][1000 genomes]
rs9344088	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9350889	0.80[EUR][1000 genomes]
rs9350891	0.81[EUR][1000 genomes]
rs9352904	0.81[EUR][1000 genomes]
rs9352905	0.81[EUR][1000 genomes]
rs9359446	0.80[EUR][1000 genomes]
rs9361690	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9361691	0.81[EUR][1000 genomes]
rs9361692	0.81[EUR][1000 genomes]
rs9361693	0.81[EUR][1000 genomes]
rs9361721	0.86[EUR][1000 genomes]
rs9449197	0.95[EUR][1000 genomes]
rs985497	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs986068	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531333	chr6:81042427-81836484	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv886315	chr6:81352515-81946866	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv886318	chr6:81447367-81769538	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1032130	chr6:81572030-81722231	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv2762604	chr6:81593275-81742093	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv428487	chr6:81607405-81742838	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv830709	chr6:81615127-81793247	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv1033733	chr6:81641291-81728782	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv886319	chr6:81670720-81741457	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv886320	chr6:81670720-81960107	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:81678200-81683800	Weak transcription	HUES64 Cell Line	embryonic stem cell

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