Variant report

Variant	rs13429780
Chromosome Location	chr2:55152564-55152565
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs13390825	0.82[AFR][1000 genomes]
rs13422342	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13430119	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs6747423	0.97[AFR][1000 genomes]
rs6749322	0.86[GIH][hapmap]
rs6759673	0.89[GIH][hapmap]
rs7355309	0.89[YRI][hapmap]
rs7355428	1.00[LWK][hapmap];0.82[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834069	chr2:55096597-55251680	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:55134000-55153800	Weak transcription	Brain Angular Gyrus	brain
2	chr2:55134400-55153600	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr2:55148600-55155600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr2:55150000-55168400	Weak transcription	Pancreas	Pancrea
5	chr2:55152200-55154200	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr2:55152200-55154400	Enhancers	Adipose Nuclei	Adipose
7	chr2:55152200-55156400	Enhancers	Fetal Muscle Leg	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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