Variant report

Variant	rs13431396
Chromosome Location	chr2:187143404-187143405
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10176849	1.00[AMR][1000 genomes]
rs10179593	1.00[AMR][1000 genomes]
rs10191818	1.00[AMR][1000 genomes]
rs10199530	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10206373	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10208891	1.00[AMR][1000 genomes]
rs10209888	1.00[AMR][1000 genomes]
rs13395026	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13398338	1.00[AMR][1000 genomes]
rs13400461	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13401340	1.00[AMR][1000 genomes]
rs13405038	1.00[AMR][1000 genomes]
rs13405248	1.00[AMR][1000 genomes]
rs13406247	1.00[AMR][1000 genomes]
rs13408748	1.00[AMR][1000 genomes]
rs13411841	1.00[AMR][1000 genomes]
rs13411859	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13422137	1.00[AMR][1000 genomes]
rs1375322	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs16827512	1.00[AMR][1000 genomes]
rs16827824	1.00[AMR][1000 genomes]
rs28502027	1.00[AMR][1000 genomes]
rs28537983	1.00[AMR][1000 genomes]
rs56182722	1.00[AMR][1000 genomes]
rs56384819	1.00[AMR][1000 genomes]
rs73979155	0.83[AFR][1000 genomes]
rs73979166	1.00[AMR][1000 genomes]
rs73979176	1.00[AMR][1000 genomes]
rs73979178	1.00[AMR][1000 genomes]
rs73979180	1.00[AMR][1000 genomes]
rs73980875	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875545	chr2:186566024-187280164	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv817325	chr2:186625679-187200841	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv868949	chr2:186657142-187327560	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv1002243	chr2:186692815-187150225	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv536077	chr2:186692815-187150225	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv932296	chr2:186737443-187265790	Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
7	nsv875548	chr2:186798249-187164657	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	nsv1014726	chr2:187036909-187213113	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv536078	chr2:187036909-187213113	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	esv3434695	chr2:187126495-187148916	Weak transcription Enhancers ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:187143400-187144000	Weak transcription	HUES64 Cell Line	embryonic stem cell

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