Variant report

Variant	rs10209888
Chromosome Location	chr2:187268386-187268387
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10170824	0.94[AFR][1000 genomes]
rs10176849	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10179593	1.00[AMR][1000 genomes]
rs10191818	1.00[AMR][1000 genomes]
rs10196330	1.00[AMR][1000 genomes]
rs10199530	1.00[AMR][1000 genomes]
rs10206373	1.00[AMR][1000 genomes]
rs13395026	1.00[AMR][1000 genomes]
rs13398338	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13400461	1.00[AMR][1000 genomes]
rs13401340	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13405038	1.00[AMR][1000 genomes]
rs13405248	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13408748	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13411841	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13411859	1.00[AMR][1000 genomes]
rs13431396	1.00[AMR][1000 genomes]
rs1375322	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16827824	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28502027	1.00[AMR][1000 genomes]
rs28537983	1.00[AMR][1000 genomes]
rs56182722	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56384819	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58626242	1.00[AMR][1000 genomes]
rs59403412	1.00[AMR][1000 genomes]
rs73979155	0.94[AFR][1000 genomes]
rs73979166	1.00[AMR][1000 genomes]
rs73979176	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73979178	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73979180	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875545	chr2:186566024-187280164	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv868949	chr2:186657142-187327560	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1006411	chr2:187150025-187291081	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv536079	chr2:187150025-187291081	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv428067	chr2:187171324-187334779	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1005680	chr2:187244500-187320653	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv536080	chr2:187244500-187320653	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv1001927	chr2:187264940-187325667	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv997835	chr2:187265730-187327561	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv536081	chr2:187265730-187327561	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:187265200-187277400	Weak transcription	Primary hematopoietic stem cells	blood

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