The 2.0 version of rSNPBase

Variant report

Variant rs10196330
Chromosome Location chr2:187389239-187389240
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:45 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:187363000-187408800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
2 chr2:187363200-187397600 Weak transcription Small Intestine intestine
3 chr2:187367200-187396800 Weak transcription Gastric stomach
4 chr2:187367200-187405800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
5 chr2:187371000-187389400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
6 chr2:187371000-187395800 Weak transcription Fetal Heart heart
7 chr2:187371000-187407800 Weak transcription Placenta Amnion Placenta Amnion
8 chr2:187372200-187390000 Weak transcription Fetal Brain Male brain
9 chr2:187373600-187395800 Weak transcription HSMMtube muscle
10 chr2:187373600-187397600 Weak transcription Sigmoid Colon Sigmoid Colon
11 chr2:187373800-187390200 Weak transcription Brain Anterior Caudate brain
12 chr2:187374400-187389800 Weak transcription Brain Germinal Matrix brain
13 chr2:187374400-187396200 Weak transcription Brain Substantia Nigra brain
14 chr2:187374400-187398800 Weak transcription Brain Inferior Temporal Lobe brain
15 chr2:187377200-187397200 Weak transcription HUVEC blood vessel
16 chr2:187379000-187397400 Weak transcription Rectal Mucosa Donor 31 rectum
17 chr2:187381800-187406600 Weak transcription NHEK skin
18 chr2:187383000-187397000 Weak transcription K562 blood
19 chr2:187383400-187397600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
20 chr2:187384200-187397800 Weak transcription A549 lung
21 chr2:187386200-187392600 Weak transcription Thymus Thymus
22 chr2:187386200-187395800 Weak transcription NH-A brain
23 chr2:187386200-187397000 Weak transcription Muscle Satellite Cultured Cells --
24 chr2:187386200-187397400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
25 chr2:187386200-187398400 Weak transcription Liver Liver
26 chr2:187386200-187405200 Weak transcription HSMM muscle
27 chr2:187386200-187408000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
28 chr2:187386400-187390200 Weak transcription Fetal Intestine Large intestine
29 chr2:187386800-187390000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
30 chr2:187386800-187390600 Weak transcription Brain Cingulate Gyrus brain
31 chr2:187386800-187392000 Weak transcription Fetal Adrenal Gland Adrenal Gland
32 chr2:187386800-187397400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
33 chr2:187386800-187397400 Weak transcription Rectal Mucosa Donor 29 rectum
34 chr2:187386800-187397600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
35 chr2:187387000-187390800 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
36 chr2:187387000-187395600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
37 chr2:187387200-187391000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
38 chr2:187387200-187397400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
39 chr2:187387400-187397600 Weak transcription Fetal Intestine Small intestine
40 chr2:187388000-187389400 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
41 chr2:187388000-187399000 Weak transcription Stomach Smooth Muscle stomach
42 chr2:187388200-187389600 Enhancers NHDF-Ad bronchial
43 chr2:187389000-187389600 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
44 chr2:187389200-187389400 Enhancers Fetal Stomach stomach
45 chr2:187389200-187389600 Enhancers Colon Smooth Muscle Colon

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Last update: Aug 31, 2015