Variant report

Variant	rs73979353
Chromosome Location	chr2:187602703-187602704
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10196330	1.00[AMR][1000 genomes]
rs13405248	1.00[AMR][1000 genomes]
rs13408748	1.00[AMR][1000 genomes]
rs28537983	1.00[AMR][1000 genomes]
rs58626242	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59403412	1.00[AMR][1000 genomes]
rs73979339	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428069	chr2:187575692-187766209	ZNF genes & repeats Weak transcription Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:187592200-187618600	Weak transcription	Osteobl	bone
2	chr2:187596600-187611400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr2:187596600-187626200	Weak transcription	Stomach Smooth Muscle	stomach
4	chr2:187598600-187621200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr2:187599600-187631000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr2:187600000-187613200	Weak transcription	Pancreas	Pancrea
7	chr2:187600200-187611000	Weak transcription	Brain Angular Gyrus	brain
8	chr2:187601800-187603400	ZNF genes & repeats	Fetal Muscle Leg	muscle
9	chr2:187601800-187603800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
10	chr2:187601800-187603800	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
11	chr2:187601800-187604000	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr2:187602400-187603000	Enhancers	H1 Cell Line	embryonic stem cell
13	chr2:187602600-187602800	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr2:187602600-187603000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr2:187602600-187603400	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr2:187602600-187603400	ZNF genes & repeats	Brain Anterior Caudate	brain
17	chr2:187602600-187604000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
18	chr2:187602600-187604200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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