Variant report

Variant	rs13435037
Chromosome Location	chr4:148905488-148905489
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:148904914..148905846-chr4:148975159..148976054,4	MCF-7	breast:
2	chr4:148905210..148905806-chr4:148931427..148932338,2	MCF-7	breast:
3	chr4:148904893..148905747-chr4:149073698..149074268,3	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10021480	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10029825	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10519926	0.82[CEU][hapmap]
rs10519933	1.00[CEU][hapmap];0.85[CHB][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1317354	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17024251	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28493775	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28552498	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28754881	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs36025358	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4364238	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs55912417	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56657155	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs58201461	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6535571	0.82[CEU][hapmap];0.85[CHB][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6535572	0.94[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6811259	0.82[CEU][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6849257	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6856135	1.00[CEU][hapmap];0.85[CHB][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73854000	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs869762	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs869763	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9684012	0.82[CEU][hapmap]
rs9990586	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9996477	0.94[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498083	chr4:148519825-148917583	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
2	nsv880244	chr4:148764252-148920089	Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1029845	chr4:148766290-148916437	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1030001	chr4:148773479-148916437	Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1017904	chr4:148814133-148975348	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:148866400-148927400	Weak transcription	Thymus	Thymus
2	chr4:148885600-148939000	Weak transcription	Pancreas	Pancrea
3	chr4:148885800-148907000	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr4:148885800-148912800	Weak transcription	Fetal Lung	lung
5	chr4:148886000-148917600	Weak transcription	Esophagus	oesophagus
6	chr4:148889200-148936200	Weak transcription	Fetal Intestine Large	intestine
7	chr4:148891600-148912800	Weak transcription	Fetal Kidney	kidney
8	chr4:148891600-148920600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr4:148891600-148928000	Weak transcription	A549	lung
10	chr4:148896600-148928400	Weak transcription	Spleen	Spleen
11	chr4:148897200-148905600	Weak transcription	Gastric	stomach
12	chr4:148897200-148917600	Weak transcription	Lung	lung
13	chr4:148898200-148920600	Weak transcription	NHEK	skin
14	chr4:148898200-148925400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr4:148900800-148911400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr4:148902000-148908400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr4:148903000-148911200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr4:148903200-148914800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr4:148903400-148907600	Weak transcription	HSMM	muscle
20	chr4:148903400-148914600	Weak transcription	HSMMtube	muscle
21	chr4:148903400-148914800	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr4:148903400-148915000	Weak transcription	Osteobl	bone
23	chr4:148903800-148906000	ZNF genes & repeats	GM12878-XiMat	blood
24	chr4:148904800-148905600	Enhancers	Skeletal Muscle Male	skeletal muscle
25	chr4:148904800-148906200	Enhancers	Duodenum Smooth Muscle	Duodenum
26	chr4:148904800-148907000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr4:148905000-148905600	Enhancers	HUES48 Cell Line	embryonic stem cell
28	chr4:148905000-148905800	Enhancers	iPS-15b Cell Line	embryonic stem cell
29	chr4:148905000-148905800	Enhancers	iPS-18 Cell Line	embryonic stem cell
30	chr4:148905000-148905800	Enhancers	Stomach Mucosa	stomach
31	chr4:148905000-148906000	Enhancers	H9 Cell Line	embryonic stem cell
32	chr4:148905000-148906400	Enhancers	Brain Inferior Temporal Lobe	brain
33	chr4:148905000-148906600	Enhancers	Colon Smooth Muscle	Colon
34	chr4:148905000-148907000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr4:148905000-148907000	Enhancers	Brain Hippocampus Middle	brain
36	chr4:148905200-148905600	ZNF genes & repeats	Fetal Muscle Trunk	muscle
37	chr4:148905200-148905800	Enhancers	Rectal Smooth Muscle	rectum
38	chr4:148905200-148906000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr4:148905200-148906000	Enhancers	Adipose Nuclei	Adipose
40	chr4:148905200-148906000	ZNF genes & repeats	Fetal Intestine Small	intestine
41	chr4:148905200-148906200	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr4:148905200-148906600	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
43	chr4:148905200-148906600	ZNF genes & repeats	Fetal Stomach	stomach
44	chr4:148905200-148907400	Weak transcription	HUES64 Cell Line	embryonic stem cell
45	chr4:148905400-148905600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr4:148905400-148905600	Flanking Active TSS	Stomach Smooth Muscle	stomach
47	chr4:148905400-148905800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
48	chr4:148905400-148905800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
49	chr4:148905400-148905800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr4:148905400-148905800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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